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September 2009, Volume 5, Issue 9
- 1-9 A Statistical Model to Identify Differentially Expressed Proteins in 2D PAGE Gels
by Steven H Wu & Michael A Black & Robyn A North & Kelly R Atkinson & Allen G Rodrigo - 1-12 Predicting Positive p53 Cancer Rescue Regions Using Most Informative Positive (MIP) Active Learning
by Samuel A Danziger & Roberta Baronio & Lydia Ho & Linda Hall & Kirsty Salmon & G Wesley Hatfield & Peter Kaiser & Richard H Lathrop - 1-15 Interrogating and Predicting Tolerated Sequence Diversity in Protein Folds: Application to E. elaterium Trypsin Inhibitor-II Cystine-Knot Miniprotein
by Jennifer L Lahti & Adam P Silverman & Jennifer R Cochran - 1-15 Statistical Use of Argonaute Expression and RISC Assembly in microRNA Target Identification
by Stephen A Stanhope & Srikumar Sengupta & Johan den Boon & Paul Ahlquist & Michael A Newton - 1-16 Parallel Computational Subunits in Dentate Granule Cells Generate Multiple Place Fields
by Balázs Ujfalussy & Tamás Kiss & Péter Érdi - 1-16 A Structured Model of Video Reproduces Primary Visual Cortical Organisation
by Pietro Berkes & Richard E Turner & Maneesh Sahani
August 2009, Volume 5, Issue 8
- 1-8 Nash Equilibria in Multi-Agent Motor Interactions
by Daniel A Braun & Pedro A Ortega & Daniel M Wolpert - 1-10 Geometric De-noising of Protein-Protein Interaction Networks
by Oleksii Kuchaiev & Marija Rašajski & Desmond J Higham & Nataša Pržulj - 1-11 A Self-Organizing Algorithm for Modeling Protein Loops
by Pu Liu & Fangqiang Zhu & Dmitrii N Rassokhin & Dimitris K Agrafiotis - 1-17 Microarray Comparative Genomic Hybridisation Analysis Incorporating Genomic Organisation, and Application to Enterobacterial Plant Pathogens
by Leighton Pritchard & Hui Liu & Clare Booth & Emma Douglas & Patrice François & Jacques Schrenzel & Peter E Hedley & Paul R J Birch & Ian K Toth - 1-24 Qualia: The Geometry of Integrated Information
by David Balduzzi & Giulio Tononi
July 2009, Volume 5, Issue 7
- 1-9 Bistable Perception Modeled as Competing Stochastic Integrations at Two Levels
by Guido Gigante & Maurizio Mattia & Jochen Braun & Paolo Del Giudice - 1-10 Identification of a Kinase Profile that Predicts Chromosome Damage Induced by Small Molecule Kinase Inhibitors
by Andrew J Olaharski & Nina Gonzaludo & Hans Bitter & David Goldstein & Stephan Kirchner & Hirdesh Uppal & Kyle Kolaja - 1-12 Semantic Similarity in Biomedical Ontologies
by Catia Pesquita & Daniel Faria & André O Falcão & Phillip Lord & Francisco M Couto
June 2009, Volume 5, Issue 6
- 1-14 Taking the Lag out of Jet Lag through Model-Based Schedule Design
by Dennis A Dean , II & Daniel B Forger & Elizabeth B Klerman - 1-14 Maximum-Likelihood Model Averaging To Profile Clustering of Site Types across Discrete Linear Sequences
by Zhang Zhang & Jeffrey P Townsend
May 2009, Volume 5, Issue 5
- 1-14 Functional Brain Networks Develop from a “Local to Distributed” Organization
by Damien A Fair & Alexander L Cohen & Jonathan D Power & Nico U F Dosenbach & Jessica A Church & Francis M Miezin & Bradley L Schlaggar & Steven E Petersen - 1-16 A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family
by Gregory D Friedland & Nils-Alexander Lakomek & Christian Griesinger & Jens Meiler & Tanja Kortemme
April 2009, Volume 5, Issue 4
- 1-4 Webb Miller and Trey Ideker To Receive Top International Bioinformatics Awards for 2009 from the International Society for Computational Biology
by B J Morrison McKay & Clare Sansom
March 2009, Volume 5, Issue 3
- 1-10 Ras Conformational Switching: Simulating Nucleotide-Dependent Conformational Transitions with Accelerated Molecular Dynamics
by Barry J Grant & Alemayehu A Gorfe & J Andrew McCammon - 1-13 Broadband Criticality of Human Brain Network Synchronization
by Manfred G Kitzbichler & Marie L Smith & Søren R Christensen & Ed Bullmore - 1-13 “I Look in Your Eyes, Honey”: Internal Face Features Induce Spatial Frequency Preference for Human Face Processing
by Matthias S Keil - 1-13 Accurate Detection of Recombinant Breakpoints in Whole-Genome Alignments
by Oscar Westesson & Ian Holmes - 1-15 Probabilistic Interaction Network of Evidence Algorithm and its Application to Complete Labeling of Peak Lists from Protein NMR Spectroscopy
by Arash Bahrami & Amir H Assadi & John L Markley & Hamid R Eghbalnia
February 2009, Volume 5, Issue 2
- 1-10 Statistical Dynamics of Flowing Red Blood Cells by Morphological Image Processing
by John M Higgins & David T Eddington & Sangeeta N Bhatia & L Mahadevan - 1-13 The Temporal Winner-Take-All Readout
by Maoz Shamir - 1-14 Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins
by Michael D Daily & Jeffrey J Gray
January 2009, Volume 5, Issue 1
- 1-7 Action Potential Initiation in the Hodgkin-Huxley Model
by Lucy J Colwell & Michael P Brenner - 1-12 Evolutionary Sequence Modeling for Discovery of Peptide Hormones
by Kemal Sonmez & Naunihal T Zaveri & Ilan A Kerman & Sharon Burke & Charles R Neal & Xinmin Xie & Stanley J Watson & Lawrence Toll
December 2008, Volume 4, Issue 12
- 1-12 Formation and Growth of Oligomers: A Monte Carlo Study of an Amyloid Tau Fragment
by Da-Wei Li & Sandipan Mohanty & Anders Irbäck & Shuanghong Huo - 1-14 Game Theory of Mind
by Wako Yoshida & Ray J Dolan & Karl J Friston
November 2008, Volume 4, Issue 11
- 1-7 A Generic Mechanism of Emergence of Amyloid Protofilaments from Disordered Oligomeric Aggregates
by Stefan Auer & Filip Meersman & Christopher M Dobson & Michele Vendruscolo - 1-23 Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag
by Jonathan M Carlson & Zabrina L Brumme & Christine M Rousseau & Chanson J Brumme & Philippa Matthews & Carl Kadie & James I Mullins & Bruce D Walker & P Richard Harrigan & Philip J R Goulder & David Heckerman
October 2008, Volume 4, Issue 10
- 1-9 Aggregation Propensity of the Human Proteome
by Elodie Monsellier & Matteo Ramazzotti & Niccolò Taddei & Fabrizio Chiti
September 2008, Volume 4, Issue 9
- 1-11 A Dual Receptor Crosstalk Model of G-Protein-Coupled Signal Transduction
by Patrick Flaherty & Mala L Radhakrishnan & Tuan Dinh & Robert A Rebres & Tamara I Roach & Michael I Jordan & Adam P Arkin - 1-18 Adaptation and Selective Information Transmission in the Cricket Auditory Neuron AN2
by Klaus Wimmer & K Jannis Hildebrandt & R Matthias Hennig & Klaus Obermayer
August 2008, Volume 4, Issue 8
- 1-9 A Novel Three-Phase Model of Brain Tissue Microstructure
by Jana L Gevertz & Salvatore Torquato - 1-10 Modeling ChIP Sequencing In Silico with Applications
by Zhengdong D Zhang & Joel Rozowsky & Michael Snyder & Joseph Chang & Mark Gerstein - 1-13 Intramolecular Cohesion of Coils Mediated by Phenylalanine–Glycine Motifs in the Natively Unfolded Domain of a Nucleoporin
by V V Krishnan & Edmond Y Lau & Justin Yamada & Daniel P Denning & Samir S Patel & Michael E Colvin & Michael F Rexach
July 2008, Volume 4, Issue 7
- 1-9 The Generation of Promoter-Mediated Transcriptional Noise in Bacteria
by Namiko Mitarai & Ian B Dodd & Michael T Crooks & Kim Sneppen - 1-10 Circadian Phase Resetting via Single and Multiple Control Targets
by Neda Bagheri & Jörg Stelling & Francis J Doyle III - 1-11 Intrinsic Gain Modulation and Adaptive Neural Coding
by Sungho Hong & Brian Nils Lundstrom & Adrienne L Fairhall - 1-12 Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology
by Karthik Devarajan
June 2008, Volume 4, Issue 6
- 1-3 Ten Simple Rules for Organizing a Scientific Meeting
by Manuel Corpas & Nils Gehlenborg & Sarath Chandra Janga & Philip E Bourne - 1-12 Regulation of Signal Duration and the Statistical Dynamics of Kinase Activation by Scaffold Proteins
by Jason W Locasale & Arup K Chakraborty - 1-15 A Comparative Computer Simulation of Dendritic Morphology
by Duncan E Donohue & Giorgio A Ascoli - 1-20 CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing
by Pradipta Ray & Suyash Shringarpure & Mladen Kolar & Eric P Xing
May 2008, Volume 4, Issue 5
- 1-2 Ten Simple Rules for Aspiring Scientists in a Low-Income Country
by Edgardo Moreno & José-María Gutiérrez - 1-10 Context-Specific Metabolic Networks Are Consistent with Experiments
by Scott A Becker & Bernhard O Palsson - 1-12 Discovering Sequence Motifs with Arbitrary Insertions and Deletions
by Martin C Frith & Neil F W Saunders & Bostjan Kobe & Timothy L Bailey - 1-12 Measuring Global Credibility with Application to Local Sequence Alignment
by Bobbie-Jo M Webb-Robertson & Lee Ann McCue & Charles E Lawrence - 1-13 Viral Population Estimation Using Pyrosequencing
by Nicholas Eriksson & Lior Pachter & Yumi Mitsuya & Soo-Yon Rhee & Chunlin Wang & Baback Gharizadeh & Mostafa Ronaghi & Robert W Shafer & Niko Beerenwinkel
April 2008, Volume 4, Issue 4
- 1-8 Distinct Timing Mechanisms Produce Discrete and Continuous Movements
by Raoul Huys & Breanna E Studenka & Nicole L Rheaume & Howard N Zelaznik & Viktor K Jirsa - 1-10 Dimensionality and Dynamics in the Behavior of C. elegans
by Greg J Stephens & Bethany Johnson-Kerner & William Bialek & William S Ryu - 1-10 Predicting Co-Complexed Protein Pairs from Heterogeneous Data
by Jian Qiu & William Stafford Noble - 1-10 A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach
by Peng Wang & John Sidney & Courtney Dow & Bianca Mothé & Alessandro Sette & Bjoern Peters - 1-11 Efficient Olfactory Coding in the Pheromone Receptor Neuron of a Moth
by Lubomir Kostal & Petr Lansky & Jean-Pierre Rospars
March 2008, Volume 4, Issue 3
- 1-12 Neural Coding of Natural Stimuli: Information at Sub-Millisecond Resolution
by Ilya Nemenman & Geoffrey D Lewen & William Bialek & Rob R de Ruyter van Steveninck - 1-14 Src Kinase Conformational Activation: Thermodynamics, Pathways, and Mechanisms
by Sichun Yang & Benoît Roux
February 2008, Volume 4, Issue 2
- 1-3 On the Process of Becoming a Great Scientist
by Morgan C Giddings - 1-8 Diminished Self-Chaperoning Activity of the ΔF508 Mutant of CFTR Results in Protein Misfolding
by Adrian W R Serohijos & Tamás Hegedűs & John R Riordan & Nikolay V Dokholyan - 1-8 Accurate Structural Correlations from Maximum Likelihood Superpositions
by Douglas L Theobald & Deborah S Wuttke - 1-8 Predicting the Receptive Range of Olfactory Receptors
by Rafi Haddad & Liran Carmel & Noam Sobel & David Harel - 1-10 Stimulus Design for Model Selection and Validation in Cell Signaling
by Joshua F Apgar & Jared E Toettcher & Drew Endy & Forest M White & Bruce Tidor - 1-11 Stochastic Differential Equation Model for Cerebellar Granule Cell Excitability
by Antti Saarinen & Marja-Leena Linne & Olli Yli-Harja - 1-12 Computational Methods for Protein Identification from Mass Spectrometry Data
by Leo McHugh & Jonathan W Arthur - 1-15 Statistical Resolution of Ambiguous HLA Typing Data
by Jennifer Listgarten & Zabrina Brumme & Carl Kadie & Gao Xiaojiang & Bruce Walker & Mary Carrington & Philip Goulder & David Heckerman
January 2008, Volume 4, Issue 1
- 1-2 Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al
by David C Nickle & Nebojsa Jojic & David Heckerman & Vladimir Jojic & Darko Kirovski & Morgane Rolland & Sergei Kosakovsky Pond & James I Mullins
December 2007, Volume 3, Issue 12
- 1-5 Getting Started in Probabilistic Graphical Models
by Edoardo M Airoldi
November 2007, Volume 3, Issue 11
- 1-1 Meta-Analysis of Drosophila Circadian Microarray Studies Identifies a Novel Set of Rhythmically Expressed Genes
by Kevin P Keegan & Suraj Pradhan & Ji-Ping Wang & Ravi Allada - 1-2 Ten Simple Rules for Graduate Students
by Jenny Gu & Philip E Bourne - 1-7 Predicting Gene Expression from Sequence: A Reexamination
by Yuan Yuan & Lei Guo & Lei Shen & Jun S Liu - 1-10 Direct Inference of SNP Heterozygosity Rates and Resolution of LOH Detection
by Xiaohong Li & Steven G Self & Patricia C Galipeau & Thomas G Paulson & Brian J Reid - 1-10 A Nucleosome-Guided Map of Transcription Factor Binding Sites in Yeast
by Leelavati Narlikar & Raluca Gordân & Alexander J Hartemink - 1-15 MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules
by Saurabh Sinha & Xin He - 1-15 From Inverse Problems in Mathematical Physiology to Quantitative Differential Diagnoses
by Sven Zenker & Jonathan Rubin & Gilles Clermont - 1-20 Where Have All the Interactions Gone? Estimating the Coverage of Two-Hybrid Protein Interaction Maps
by Hailiang Huang & Bruno M Jedynak & Joel S Bader
October 2007, Volume 3, Issue 10
- 1-8 Universally Sloppy Parameter Sensitivities in Systems Biology Models
by Ryan N Gutenkunst & Joshua J Waterfall & Fergal P Casey & Kevin S Brown & Christopher R Myers & James P Sethna - 1-8 A Statistical Framework for Modeling HLA-Dependent T Cell Response Data
by Jennifer Listgarten & Nicole Frahm & Carl Kadie & Christian Brander & David Heckerman - 1-11 Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data
by Tom C Freeman & Leon Goldovsky & Markus Brosch & Stijn van Dongen & Pierre Mazière & Russell J Grocock & Shiri Freilich & Janet Thornton & Anton J Enright - 1-12 Heat Shock Response in CHO Mammalian Cells Is Controlled by a Nonlinear Stochastic Process
by Ovidiu Lipan & Jean-Marc Navenot & Zixuan Wang & Lei Huang & Stephen C Peiper - 1-14 Landscape as a Model: The Importance of Geometry
by E Penelope Holland & James N Aegerter & Calvin Dytham & Graham C Smith
September 2007, Volume 3, Issue 9
- 1-7 Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
by Doron Betel & Kevin E Breitkreuz & Ruth Isserlin & Danielle Dewar-Darch & Mike Tyers & Christopher W V Hogue - 1-8 Bistability and Oscillations in the Huang-Ferrell Model of MAPK Signaling
by Liang Qiao & Robert B Nachbar & Ioannis G Kevrekidis & Stanislav Y Shvartsman - 1-11 Signal Propagation in Proteins and Relation to Equilibrium Fluctuations
by Chakra Chennubhotla & Ivet Bahar - 1-12 Structural Reorganisation and Potential Toxicity of Oligomeric Species Formed during the Assembly of Amyloid Fibrils
by Mookyung Cheon & Iksoo Chang & Sandipan Mohanty & Leila M Luheshi & Christopher M Dobson & Michele Vendruscolo & Giorgio Favrin
August 2007, Volume 3, Issue 8
- 1-8 A Primer on Learning in Bayesian Networks for Computational Biology
by Chris J Needham & James R Bradford & Andrew J Bulpitt & David R Westhead - 1-9 An Information-Theoretic Characterization of the Optimal Gradient Sensing Response of Cells
by Burton W Andrews & Pablo A Iglesias - 1-10 Functional Representation of Enzymes by Specific Peptides
by Vered Kunik & Yasmine Meroz & Zach Solan & Ben Sandbank & Uri Weingart & Eytan Ruppin & David Horn - 1-12 Image-Based Modeling Reveals Dynamic Redistribution of DNA Damage into Nuclear Sub-Domains
by Sylvain V Costes & Artem Ponomarev & James L Chen & David Nguyen & Francis A Cucinotta & Mary Helen Barcellos-Hoff - 1-14 Design of Multi-Specificity in Protein Interfaces
by Elisabeth L Humphris & Tanja Kortemme - 1-15 Automated Discovery of Functional Generality of Human Gene Expression Programs
by Georg K Gerber & Robin D Dowell & Tommi S Jaakkola & David K Gifford - 1-15 A Numerical Approach to Ion Channel Modelling Using Whole-Cell Voltage-Clamp Recordings and a Genetic Algorithm
by Meron Gurkiewicz & Alon Korngreen - 1-18 Slowness and Sparseness Lead to Place, Head-Direction, and Spatial-View Cells
by Mathias Franzius & Henning Sprekeler & Laurenz Wiskott
July 2007, Volume 3, Issue 7
- 1-10 Introduction to Computational Proteomics
by Jacques Colinge & Keiryn L Bennett - 1-18 Novel Algorithms Reveal Streptococcal Transcriptomes and Clues about Undefined Genes
by Patricia A Ryan & Brian W Kirk & Chad W Euler & Raymond Schuch & Vincent A Fischetti
June 2007, Volume 3, Issue 6
- 1-3 The International Society for Computational Biology 10th Anniversary
by Lawrence Hunter & Russ B Altman & Philip E Bourne - 1-4 A View from the Dark Side
by David B Searls - 1-7 Digital Signal Processing Reveals Circadian Baseline Oscillation in Majority of Mammalian Genes
by Andrey A Ptitsyn & Sanjin Zvonic & Jeffrey M Gimble - 1-8 Flexible and Accurate Detection of Genomic Copy-Number Changes from aCGH
by Oscar M Rueda & Ramón Díaz-Uriarte - 1-9 Hierarchical Processing of Auditory Objects in Humans
by Sukhbinder Kumar & Klaas E Stephan & Jason D Warren & Karl J Friston & Timothy D Griffiths - 1-11 Machine Learning and Its Applications to Biology
by Adi L Tarca & Vincent J Carey & Xue-wen Chen & Roberto Romero & Sorin Drăghici
May 2007, Volume 3, Issue 5
- 1-1 “Simple Rules for Editors”? Here is One Rule to Tackle Neglected Problems of Publishing
by Thomas C Erren & Michael Erren - 1-2 Ten Simple Rules for a Good Poster Presentation
by Thomas C Erren & Philip E Bourne - 1-10 Cooperative Gating and Spatial Organization of Membrane Proteins through Elastic Interactions
by Tristan Ursell & Kerwyn Casey Huang & Eric Peterson & Rob Phillips - 1-11 Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites
by Timothy E Reddy & Charles DeLisi & Boris E Shakhnovich - 1-13 The Human Genomic Melting Map
by Fang Liu & Eivind Tøstesen & Jostein K Sundet & Tor-Kristian Jenssen & Christoph Bock & Geir Ivar Jerstad & William G Thilly & Eivind Hovig
April 2007, Volume 3, Issue 4
- 1-2 Ten Simple Rules for Making Good Oral Presentations
by Philip E Bourne
March 2007, Volume 3, Issue 3
- 1-10 Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction
by Axel Bernal & Koby Crammer & Artemis Hatzigeorgiou & Fernando Pereira - 1-14 DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies
by Shaun Mahony & Philip E Auron & Panayiotis V Benos - 1-15 Query-Dependent Banding (QDB) for Faster RNA Similarity Searches
by Eric P Nawrocki & Sean R Eddy
February 2007, Volume 3, Issue 2
- 1-14 Functional Impact of Missense Variants in BRCA1 Predicted by Supervised Learning
by Rachel Karchin & Alvaro N A Monteiro & Sean V Tavtigian & Marcelo A Carvalho & Andrej Sali
January 2007, Volume 3, Issue 1
- 1-2 Moving Education Forward
by Fran Lewitter
December 2006, Volume 2, Issue 12
- 1-9 Transcriptional Regulation by Competing Transcription Factor Modules
by Rutger Hermsen & Sander Tans & Pieter Rein ten Wolde
November 2006, Volume 2, Issue 11
- 1-2 Ten Simple Rules for Selecting a Postdoctoral Position
by Philip E Bourne & Iddo Friedberg - 1-7 Robustness and Fragility in Immunosenescence
by Sean P Stromberg & Jean Carlson - 1-8 Humans Can Adopt Optimal Discounting Strategy under Real-Time Constraints
by N Schweighofer & K Shishida & C E Han & Y Okamoto & S C Tanaka & S Yamawaki & K Doya - 1-10 Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle
by Jin Wang & Bo Huang & Xuefeng Xia & Zhirong Sun - 1-12 Optimal Noise Filtering in the Chemotactic Response of Escherichia coli
by Burton W Andrews & Tau-Mu Yi & Pablo A Iglesias - 1-12 Meta-Analysis of Differentiating Mouse Embryonic Stem Cell Gene Expression Kinetics Reveals Early Change of a Small Gene Set
by Clive H Glover & Michael Marin & Connie J Eaves & Cheryl D Helgason & James M Piret & Jennifer Bryan
October 2006, Volume 2, Issue 10
- 1-8 Cooperation Prevails When Individuals Adjust Their Social Ties
by Francisco C Santos & Jorge M Pacheco & Tom Lenaerts
September 2006, Volume 2, Issue 9
- 1-2 Ten Simple Rules for Reviewers
by Philip E Bourne & Alon Korngreen - 1-13 Sampling Realistic Protein Conformations Using Local Structural Bias
by Thomas Hamelryck & John T Kent & Anders Krogh - 1-14 Imitating Manual Curation of Text-Mined Facts in Biomedicine
by Raul Rodriguez-Esteban & Ivan Iossifov & Andrey Rzhetsky
August 2006, Volume 2, Issue 8
- 1-8 The Ion Channel Inverse Problem: Neuroinformatics Meets Biophysics
by Robert C Cannon & Giampaolo D'Alessandro
July 2006, Volume 2, Issue 7
- 1-2 Authors' Reply
by Hung D Nguyen & Maki Yoshihama & Naoya Kenmochi - 1-11 Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems
by Marcus Kaiser & Claus C Hilgetag - 1-11 Complex Parameter Landscape for a Complex Neuron Model
by Pablo Achard & Erik De Schutter - 1-17 Wiggle—Predicting Functionally Flexible Regions from Primary Sequence
by Jenny Gu & Michael Gribskov & Philip E Bourne
May 2006, Volume 2, Issue 5
- 1-10 Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays
by Rameen Beroukhim & Ming Lin & Yuhyun Park & Ke Hao & Xiaojun Zhao & Levi A Garraway & Edward A Fox & Ephraim P Hochberg & Ingo K Mellinghoff & Matthias D Hofer & Aurelien Descazeaud & Mark A Rubin & Matthew Meyerson & Wing Hung Wong & William R Sellers & Cheng Li - 1-10 Iterative Reconstruction of Transcriptional Regulatory Networks: An Algorithmic Approach
by Christian L Barrett & Bernhard O Palsson - 1-12 Reverse Engineering the Gap Gene Network of Drosophila melanogaster
by Theodore J Perkins & Johannes Jaeger & John Reinitz & Leon Glass
April 2006, Volume 2, Issue 4
- 1-13 Codon Usage Domains over Bacterial Chromosomes
by Marc Bailly-Bechet & Antoine Danchin & Mudassar Iqbal & Matteo Marsili & Massimo Vergassola
February 2006, Volume 2, Issue 2
- 1-2 Ten Simple Rules for Getting Grants
by Philip E Bourne & Leo M Chalupa
November 2005, Volume 1, Issue 6
- 1-10 A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes
by Daniel H Haft & Jeremy Selengut & Emmanuel F Mongodin & Karen E Nelson
October 2005, Volume 1, Issue 5
- 1-2 Ten Simple Rules for Getting Published
by Philip E Bourne