Ras Conformational Switching: Simulating Nucleotide-Dependent Conformational Transitions with Accelerated Molecular Dynamics
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DOI: 10.1371/journal.pcbi.1000325
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Citations
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Cited by:
- Rudy Clausen & Buyong Ma & Ruth Nussinov & Amarda Shehu, 2015. "Mapping the Conformation Space of Wildtype and Mutant H-Ras with a Memetic, Cellular, and Multiscale Evolutionary Algorithm," PLOS Computational Biology, Public Library of Science, vol. 11(9), pages 1-26, September.
- Suryani Lukman & Barry J Grant & Alemayehu A Gorfe & Guy H Grant & J Andrew McCammon, 2010. "The Distinct Conformational Dynamics of K-Ras and H-Ras A59G," PLOS Computational Biology, Public Library of Science, vol. 6(9), pages 1-9, September.
- César Augusto F de Oliveira & Barry J Grant & Michelle Zhou & J Andrew McCammon, 2011. "Large-Scale Conformational Changes of Trypanosoma cruzi Proline Racemase Predicted by Accelerated Molecular Dynamics Simulation," PLOS Computational Biology, Public Library of Science, vol. 7(10), pages 1-7, October.
- Ammu Prasanna Kumar & Suryani Lukman, 2018. "Allosteric binding sites in Rab11 for potential drug candidates," PLOS ONE, Public Library of Science, vol. 13(6), pages 1-46, June.
- Abhijeet Kapoor & Alex Travesset, 2014. "Mechanism of the Exchange Reaction in HRAS from Multiscale Modeling," PLOS ONE, Public Library of Science, vol. 9(10), pages 1-12, October.
- Juan Manuel Ortiz-Sanchez & Sara E Nichols & Jacqueline Sayyah & Joan Heller Brown & J Andrew McCammon & Barry J Grant, 2012. "Identification of Potential Small Molecule Binding Pockets on Rho Family GTPases," PLOS ONE, Public Library of Science, vol. 7(7), pages 1-13, July.
- Neeru Sharma & Uddhavesh Sonavane & Rajendra Joshi, 2020. "Comparative MD simulations and advanced analytics based studies on wild-type and hot-spot mutant A59G HRas," PLOS ONE, Public Library of Science, vol. 15(10), pages 1-22, October.
- Guido Scarabelli & Barry J Grant, 2013. "Mapping the Structural and Dynamical Features of Kinesin Motor Domains," PLOS Computational Biology, Public Library of Science, vol. 9(11), pages 1-13, November.
- Hongyang Li & Xin-Qiu Yao & Barry J Grant, 2018. "Comparative structural dynamic analysis of GTPases," PLOS Computational Biology, Public Library of Science, vol. 14(11), pages 1-19, November.
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