Automated Discovery of Functional Generality of Human Gene Expression Programs
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pcbi.0030148
Download full text from publisher
References listed on IDEAS
- Daniel D. Lee & H. Sebastian Seung, 1999. "Learning the parts of objects by non-negative matrix factorization," Nature, Nature, vol. 401(6755), pages 788-791, October.
- Teh, Yee Whye & Jordan, Michael I. & Beal, Matthew J. & Blei, David M., 2006. "Hierarchical Dirichlet Processes," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1566-1581, December.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Ali Faisal & Jaakko Peltonen & Elisabeth Georgii & Johan Rung & Samuel Kaski, 2014. "Toward Computational Cumulative Biology by Combining Models of Biological Datasets," PLOS ONE, Public Library of Science, vol. 9(11), pages 1-17, November.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Yoshi Fujiwara & Rubaiyat Islam, 2021. "Bitcoin's Crypto Flow Network," Papers 2106.11446, arXiv.org, revised Jul 2021.
- Rafael Teixeira & Mário Antunes & Diogo Gomes & Rui L. Aguiar, 2024. "Comparison of Semantic Similarity Models on Constrained Scenarios," Information Systems Frontiers, Springer, vol. 26(4), pages 1307-1330, August.
- Del Corso, Gianna M. & Romani, Francesco, 2019. "Adaptive nonnegative matrix factorization and measure comparisons for recommender systems," Applied Mathematics and Computation, Elsevier, vol. 354(C), pages 164-179.
- P Fogel & C Geissler & P Cotte & G Luta, 2022. "Applying separative non-negative matrix factorization to extra-financial data," Working Papers hal-03689774, HAL.
- Michelle Dietzen & Haoran Zhai & Olivia Lucas & Oriol Pich & Christopher Barrington & Wei-Ting Lu & Sophia Ward & Yanping Guo & Robert E. Hynds & Simone Zaccaria & Charles Swanton & Nicholas McGranaha, 2024. "Replication timing alterations are associated with mutation acquisition during breast and lung cancer evolution," Nature Communications, Nature, vol. 15(1), pages 1-23, December.
- Redivo, Edoardo & Nguyen, Hien D. & Gupta, Mayetri, 2020. "Bayesian clustering of skewed and multimodal data using geometric skewed normal distributions," Computational Statistics & Data Analysis, Elsevier, vol. 152(C).
- Spelta, A. & Pecora, N. & Rovira Kaltwasser, P., 2019. "Identifying Systemically Important Banks: A temporal approach for macroprudential policies," Journal of Policy Modeling, Elsevier, vol. 41(1), pages 197-218.
- Paul Fogel & Yann Gaston-Mathé & Douglas Hawkins & Fajwel Fogel & George Luta & S. Stanley Young, 2016. "Applications of a Novel Clustering Approach Using Non-Negative Matrix Factorization to Environmental Research in Public Health," IJERPH, MDPI, vol. 13(5), pages 1-14, May.
- Le Thi Khanh Hien & Duy Nhat Phan & Nicolas Gillis, 2022. "Inertial alternating direction method of multipliers for non-convex non-smooth optimization," Computational Optimization and Applications, Springer, vol. 83(1), pages 247-285, September.
- Parvin Ahmadi & Iman Gholampour & Mahmoud Tabandeh, 2018. "Cluster-based sparse topical coding for topic mining and document clustering," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 12(3), pages 537-558, September.
- Jingfeng Guo & Chao Zheng & Shanshan Li & Yutong Jia & Bin Liu, 2022. "BiInfGCN: Bilateral Information Augmentation of Graph Convolutional Networks for Recommendation," Mathematics, MDPI, vol. 10(17), pages 1-16, August.
- Jianfei Cao & Han Yang & Jianshu Lv & Quanyuan Wu & Baolei Zhang, 2023. "Estimating Soil Salinity with Different Levels of Vegetation Cover by Using Hyperspectral and Non-Negative Matrix Factorization Algorithm," IJERPH, MDPI, vol. 20(4), pages 1-15, February.
- Jeffrey L. Furman & Florenta Teodoridis, 2020. "Automation, Research Technology, and Researchers’ Trajectories: Evidence from Computer Science and Electrical Engineering," Organization Science, INFORMS, vol. 31(2), pages 330-354, March.
- Zhang, Lifeng & Chao, Xiangrui & Qian, Qian & Jing, Fuying, 2022. "Credit evaluation solutions for social groups with poor services in financial inclusion: A technical forecasting method," Technological Forecasting and Social Change, Elsevier, vol. 183(C).
- Yi Yu & Jaeseung Baek & Ali Tosyali & Myong K. Jeong, 2024. "Robust asymmetric non-negative matrix factorization for clustering nodes in directed networks," Annals of Operations Research, Springer, vol. 341(1), pages 245-265, October.
- Wentao Qu & Xianchao Xiu & Huangyue Chen & Lingchen Kong, 2023. "A Survey on High-Dimensional Subspace Clustering," Mathematics, MDPI, vol. 11(2), pages 1-39, January.
- Anna Luiza Silva Almeida Vicente & Alexei Novoloaca & Vincent Cahais & Zainab Awada & Cyrille Cuenin & Natália Spitz & André Lopes Carvalho & Adriane Feijó Evangelista & Camila Souza Crovador & Rui Ma, 2022. "Cutaneous and acral melanoma cross-OMICs reveals prognostic cancer drivers associated with pathobiology and ultraviolet exposure," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
- Shu-Ping Shi & Yong Song, 2012.
"Identifying Speculative Bubbles with an Infinite Hidden Markov Model,"
Working Paper series
26_12, Rimini Centre for Economic Analysis.
- Song, Yong & Shi, Shuping, 2012. "Identifying speculative bubbles with an in finite hidden Markov model," MPRA Paper 36455, University Library of Munich, Germany.
- Jin, Xin & Maheu, John M. & Yang, Qiao, 2022. "Infinite Markov pooling of predictive distributions," Journal of Econometrics, Elsevier, vol. 228(2), pages 302-321.
- Takehiro Sano & Tsuyoshi Migita & Norikazu Takahashi, 2022. "A novel update rule of HALS algorithm for nonnegative matrix factorization and Zangwill’s global convergence," Journal of Global Optimization, Springer, vol. 84(3), pages 755-781, November.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pcbi00:0030148. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ploscompbiol (email available below). General contact details of provider: https://journals.plos.org/ploscompbiol/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.