Bistability and Oscillations in the Huang-Ferrell Model of MAPK Signaling
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pcbi.0030184
Download full text from publisher
References listed on IDEAS
- Alex Sigal & Ron Milo & Ariel Cohen & Naama Geva-Zatorsky & Yael Klein & Yuvalal Liron & Nitzan Rosenfeld & Tamar Danon & Natalie Perzov & Uri Alon, 2006. "Variability and memory of protein levels in human cells," Nature, Nature, vol. 444(7119), pages 643-646, November.
- John R. S. Newman & Sina Ghaemmaghami & Jan Ihmels & David K. Breslow & Matthew Noble & Joseph L. DeRisi & Jonathan S. Weissman, 2006. "Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise," Nature, Nature, vol. 441(7095), pages 840-846, June.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Tatsuaki Tsuruyama, 2014. "A Model of Cell Biological Signaling Predicts a Phase Transition of Signaling and Provides Mathematical Formulae," PLOS ONE, Public Library of Science, vol. 9(7), pages 1-8, July.
- Samrat Chatterjee & Dhiraj Kumar, 2011. "Unraveling the Design Principle for Motif Organization in Signaling Networks," PLOS ONE, Public Library of Science, vol. 6(12), pages 1-9, December.
- Otto Hadač & František Muzika & Vladislav Nevoral & Michal Přibyl & Igor Schreiber, 2017. "Minimal oscillating subnetwork in the Huang-Ferrell model of the MAPK cascade," PLOS ONE, Public Library of Science, vol. 12(6), pages 1-25, June.
- Carlo Chan & Xinfeng Liu & Liming Wang & Lee Bardwell & Qing Nie & Germán Enciso, 2012. "Protein Scaffolds Can Enhance the Bistability of Multisite Phosphorylation Systems," PLOS Computational Biology, Public Library of Science, vol. 8(6), pages 1-9, June.
- Banaji, Murad & Boros, Balázs & Hofbauer, Josef, 2022. "Adding species to chemical reaction networks: Preserving rank preserves nondegenerate behaviours," Applied Mathematics and Computation, Elsevier, vol. 426(C).
- Peter Rashkov & Ian P Barrett & Robert E Beardmore & Claus Bendtsen & Ivana Gudelj, 2016. "Kinase Inhibition Leads to Hormesis in a Dual Phosphorylation-Dephosphorylation Cycle," PLOS Computational Biology, Public Library of Science, vol. 12(11), pages 1-15, November.
- Tetsuya Shiraishi & Shinako Matsuyama & Hiroaki Kitano, 2010. "Large-Scale Analysis of Network Bistability for Human Cancers," PLOS Computational Biology, Public Library of Science, vol. 6(7), pages 1-12, July.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Ming Ni & Antoine L Decrulle & Fanette Fontaine & Alice Demarez & Francois Taddei & Ariel B Lindner, 2012. "Pre-Disposition and Epigenetics Govern Variation in Bacterial Survival upon Stress," PLOS Genetics, Public Library of Science, vol. 8(12), pages 1-11, December.
- Warren Pilbrough & Trent P Munro & Peter Gray, 2009. "Intraclonal Protein Expression Heterogeneity in Recombinant CHO Cells," PLOS ONE, Public Library of Science, vol. 4(12), pages 1-11, December.
- Edward C Schrom II & Simon A Levin & Andrea L Graham, 2020. "Quorum sensing via dynamic cytokine signaling comprehensively explains divergent patterns of effector choice among helper T cells," PLOS Computational Biology, Public Library of Science, vol. 16(7), pages 1-21, July.
- Mohammad Soltani & Cesar A Vargas-Garcia & Duarte Antunes & Abhyudai Singh, 2016. "Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes," PLOS Computational Biology, Public Library of Science, vol. 12(8), pages 1-23, August.
- Tae J Lee & Jeffrey Wong & Sena Bae & Anna Jisu Lee & Allison Lopatkin & Fan Yuan & Lingchong You, 2015. "A Power-Law Dependence of Bacterial Invasion on Mammalian Host Receptors," PLOS Computational Biology, Public Library of Science, vol. 11(4), pages 1-17, April.
- Kazunari Iwamoto & Yuki Shindo & Koichi Takahashi, 2016. "Modeling Cellular Noise Underlying Heterogeneous Cell Responses in the Epidermal Growth Factor Signaling Pathway," PLOS Computational Biology, Public Library of Science, vol. 12(11), pages 1-18, November.
- Lee, Julian, 2023. "Poisson distributions in stochastic dynamics of gene expression: What events do they count?," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 630(C).
- Louis-François Handfield & Yolanda T Chong & Jibril Simmons & Brenda J Andrews & Alan M Moses, 2013. "Unsupervised Clustering of Subcellular Protein Expression Patterns in High-Throughput Microscopy Images Reveals Protein Complexes and Functional Relationships between Proteins," PLOS Computational Biology, Public Library of Science, vol. 9(6), pages 1-19, June.
- Stuart Aitken & Marie-Cécile Robert & Ross D Alexander & Igor Goryanin & Edouard Bertrand & Jean D Beggs, 2010. "Processivity and Coupling in Messenger RNA Transcription," PLOS ONE, Public Library of Science, vol. 5(1), pages 1-12, January.
- UnJin Lee & John J Skinner & John Reinitz & Marsha Rich Rosner & Eun-Jin Kim, 2015. "Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations," PLOS ONE, Public Library of Science, vol. 10(7), pages 1-17, July.
- David A Sivak & Matt Thomson, 2014. "Environmental Statistics and Optimal Regulation," PLOS Computational Biology, Public Library of Science, vol. 10(9), pages 1-12, September.
- Najme Khorasani & Mehdi Sadeghi & Abbas Nowzari-Dalini, 2020. "A computational model of stem cell molecular mechanism to maintain tissue homeostasis," PLOS ONE, Public Library of Science, vol. 15(7), pages 1-25, July.
- Monica T. Dayao & Maigan Brusko & Clive Wasserfall & Ziv Bar-Joseph, 2022. "Membrane marker selection for segmenting single cell spatial proteomics data," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
- Francesco Montefusco & Ozgur E Akman & Orkun S Soyer & Declan G Bates, 2016. "Ultrasensitive Negative Feedback Control: A Natural Approach for the Design of Synthetic Controllers," PLOS ONE, Public Library of Science, vol. 11(8), pages 1-22, August.
- Tanya L Leise & Connie W Wang & Paula J Gitis & David K Welsh, 2012. "Persistent Cell-Autonomous Circadian Oscillations in Fibroblasts Revealed by Six-Week Single-Cell Imaging of PER2::LUC Bioluminescence," PLOS ONE, Public Library of Science, vol. 7(3), pages 1-10, March.
- Frank J Bruggeman & Nils Blüthgen & Hans V Westerhoff, 2009. "Noise Management by Molecular Networks," PLOS Computational Biology, Public Library of Science, vol. 5(9), pages 1-11, September.
- Yelyzaveta Shlyakhtina & Bianca Bloechl & Maximiliano M. Portal, 2023. "BdLT-Seq as a barcode decay-based method to unravel lineage-linked transcriptome plasticity," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
- Marc S Sherman & Barak A Cohen, 2014. "A Computational Framework for Analyzing Stochasticity in Gene Expression," PLOS Computational Biology, Public Library of Science, vol. 10(5), pages 1-13, May.
- Alexey A Gritsenko & Marc Hulsman & Marcel J T Reinders & Dick de Ridder, 2015. "Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data," PLOS Computational Biology, Public Library of Science, vol. 11(8), pages 1-26, August.
- Anissa Guillemin & Ronan Duchesne & Fabien Crauste & Sandrine Gonin-Giraud & Olivier Gandrillon, 2019. "Drugs modulating stochastic gene expression affect the erythroid differentiation process," PLOS ONE, Public Library of Science, vol. 14(11), pages 1-19, November.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pcbi00:0030184. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ploscompbiol (email available below). General contact details of provider: https://journals.plos.org/ploscompbiol/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.