Population Structure and Eigenanalysis

Citations

Cited by:

1. Wenying Peng & Bin Li & Jin Li & Lianpeng Chang & Jing Bai & Yuting Yi & Rongrong Chen & Yanyan Zhang & Chen Chen & Xingxiang Pu & Meilin Jiang & Jia Li & Rui Zhong & Fang Xu & Bolin Chen & Li Xu & Ni, 2022. "Clinical and genomic features of Chinese lung cancer patients with germline mutations," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
2. Gyaneshwer Chaubey & Anurag Kadian & Saroj Bala & Vadlamudi Raghavendra Rao, 2015. "Genetic Affinity of the Bhil, Kol and Gond Mentioned in Epic Ramayana," PLOS ONE, Public Library of Science, vol. 10(6), pages 1-11, June.
3. Daniel Svensson & Matilda Rentoft & Anna M Dahlin & Emma Lundholm & Pall I Olason & Andreas Sjödin & Carin Nylander & Beatrice S Melin & Johan Trygg & Erik Johansson, 2020. "A whole-genome sequenced control population in northern Sweden reveals subregional genetic differences," PLOS ONE, Public Library of Science, vol. 15(9), pages 1-18, September.
4. Junyang Qian & Yosuke Tanigawa & Wenfei Du & Matthew Aguirre & Chris Chang & Robert Tibshirani & Manuel A Rivas & Trevor Hastie, 2020. "A fast and scalable framework for large-scale and ultrahigh-dimensional sparse regression with application to the UK Biobank," PLOS Genetics, Public Library of Science, vol. 16(10), pages 1-30, October.
5. Yuk Yee Leung & Adam C. Naj & Yi-Fan Chou & Otto Valladares & Michael Schmidt & Kara Hamilton-Nelson & Nicholas Wheeler & Honghuang Lin & Prabhakaran Gangadharan & Liming Qu & Kaylyn Clark & Amanda B., 2024. "Human whole-exome genotype data for Alzheimer’s disease," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
6. Jose Blanca & Joaquín Cañizares & Laura Cordero & Laura Pascual & María José Diez & Fernando Nuez, 2012. "Variation Revealed by SNP Genotyping and Morphology Provides Insight into the Origin of the Tomato," PLOS ONE, Public Library of Science, vol. 7(10), pages 1-17, October.
7. Farnoosh Abbas-Aghababazadeh & Qian Li & Brooke L Fridley, 2018. "Comparison of normalization approaches for gene expression studies completed with high-throughput sequencing," PLOS ONE, Public Library of Science, vol. 13(10), pages 1-21, October.
8. Feher Kristen & Whelan James & Müller Samuel, 2012. "Exploring Multicollinearity Using a Random Matrix Theory Approach," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 11(3), pages 1-35, May.
9. Estavoyer, Maxime & François, Olivier, 2022. "Theoretical analysis of principal components in an umbrella model of intraspecific evolution," Theoretical Population Biology, Elsevier, vol. 148(C), pages 11-21.
10. Emile R Chimusa & Michelle Daya & Marlo Möller & Raj Ramesar & Brenna M Henn & Paul D van Helden & Nicola J Mulder & Eileen G Hoal, 2013. "Determining Ancestry Proportions in Complex Admixture Scenarios in South Africa Using a Novel Proxy Ancestry Selection Method," PLOS ONE, Public Library of Science, vol. 8(9), pages 1-14, September.
11. Felsenstein, Joseph, 2015. "Covariation of gene frequencies in a stepping-stone lattice of populations," Theoretical Population Biology, Elsevier, vol. 100(C), pages 88-97.
12. Marie-Claude Babron & Marie de Tayrac & Douglas N Rutledge & Eleftheria Zeggini & Emmanuelle Génin, 2012. "Rare and Low Frequency Variant Stratification in the UK Population: Description and Impact on Association Tests," PLOS ONE, Public Library of Science, vol. 7(10), pages 1-9, October.
13. Morten Dybdahl Krebs & Gonçalo Espregueira Themudo & Michael Eriksen Benros & Ole Mors & Anders D. Børglum & David Hougaard & Preben Bo Mortensen & Merete Nordentoft & Michael J. Gandal & Chun Chieh F, 2021. "Associations between patterns in comorbid diagnostic trajectories of individuals with schizophrenia and etiological factors," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
14. Jianzhong Ma & Christopher I Amos, 2012. "Investigation of Inversion Polymorphisms in the Human Genome Using Principal Components Analysis," PLOS ONE, Public Library of Science, vol. 7(7), pages 1-12, July.
15. Li, Zhaohai & Zhang, Hong & Zheng, Gang & Gastwirth, Joseph L. & Gail, Mitchell H., 2009. "Excess false positive rate caused by population stratification and disease rate heterogeneity in case-control association studies," Computational Statistics & Data Analysis, Elsevier, vol. 53(5), pages 1767-1781, March.
16. Isabel Alves & Joanna Giemza & Michael G. B. Blum & Carolina Bernhardsson & Stéphanie Chatel & Matilde Karakachoff & Aude Pierre & Anthony F. Herzig & Robert Olaso & Martial Monteil & Véronique Gallie, 2024. "Human genetic structure in Northwest France provides new insights into West European historical demography," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
17. Tuomas Hämälä & Christopher Moore & Laura Cowan & Matthew Carlile & David Gopaulchan & Marie K. Brandrud & Siri Birkeland & Matthew Loose & Filip Kolář & Marcus A. Koch & Levi Yant, 2024. "Impact of whole-genome duplications on structural variant evolution in Cochlearia," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
18. Zhao Huaqing & Mitra Nandita & Kanetsky Peter A. & Nathanson Katherine L. & Rebbeck Timothy R., 2018. "A practical approach to adjusting for population stratification in genome-wide association studies: principal components and propensity scores (PCAPS)," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 17(6), pages 1-12, December.
19. Zheng, Xiuwen & Weir, Bruce S., 2016. "Eigenanalysis of SNP data with an identity by descent interpretation," Theoretical Population Biology, Elsevier, vol. 107(C), pages 65-76.
20. Yaron Granot & Omri Tal & Saharon Rosset & Karl Skorecki, 2016. "On the Apportionment of Population Structure," PLOS ONE, Public Library of Science, vol. 11(8), pages 1-24, August.
21. Caitlin E. Carey & Rebecca Shafee & Robbee Wedow & Amanda Elliott & Duncan S. Palmer & John Compitello & Masahiro Kanai & Liam Abbott & Patrick Schultz & Konrad J. Karczewski & Samuel C. Bryant & Caro, 2024. "Principled distillation of UK Biobank phenotype data reveals underlying structure in human variation," Nature Human Behaviour, Nature, vol. 8(8), pages 1599-1615, August.
22. Ning Jiang & Minghui Wang & Tianye Jia & Lin Wang & Lindsey Leach & Christine Hackett & David Marshall & Zewei Luo, 2011. "A Robust Statistical Method for Association-Based eQTL Analysis," PLOS ONE, Public Library of Science, vol. 6(8), pages 1-11, August.
23. André X C N Valente & Joseph Zischkau & Joo Heon Shin & Yuan Gao & Abhijit Sarkar, 2012. "Genome-Wide Association Study Heterogeneous Cohort Homogenization via Subject Weight Knock-Down," PLOS ONE, Public Library of Science, vol. 7(10), pages 1-10, October.
24. Özkan İş & Xue Wang & Joseph S. Reddy & Yuhao Min & Elanur Yilmaz & Prabesh Bhattarai & Tulsi Patel & Jeremiah Bergman & Zachary Quicksall & Michael G. Heckman & Frederick Q. Tutor-New & Birsen Can De, 2024. "Gliovascular transcriptional perturbations in Alzheimer’s disease reveal molecular mechanisms of blood brain barrier dysfunction," Nature Communications, Nature, vol. 15(1), pages 1-23, December.
25. Andaine Seguin-Orlando & Richard Donat & Clio Der Sarkissian & John Southon & Catherine Thèves & Claire Manen & Yaramila Tchérémissinoff & Eric Crubézy & Beth Shapiro & Jean-François Deleuze & Love Da, 2021. "Heterogeneous Hunter-Gatherer and Steppe-Related Ancestries in Late Neolithic and Bell Beaker Genomes from Present-Day France," Post-Print hal-03150872, HAL.
26. Humberto García-Ortiz & Francisco Barajas-Olmos & Cecilia Contreras-Cubas & Miguel Ángel Cid-Soto & Emilio J. Córdova & Federico Centeno-Cruz & Elvia Mendoza-Caamal & Isabel Cicerón-Arellano & Marlen , 2021. "The genomic landscape of Mexican Indigenous populations brings insights into the peopling of the Americas," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
27. Priya Moorjani & Nick Patterson & Joel N Hirschhorn & Alon Keinan & Li Hao & Gil Atzmon & Edward Burns & Harry Ostrer & Alkes L Price & David Reich, 2011. "The History of African Gene Flow into Southern Europeans, Levantines, and Jews," PLOS Genetics, Public Library of Science, vol. 7(4), pages 1-13, April.
28. Hyosik Jang & Ian M Ehrenreich, 2012. "Genome-Wide Characterization of Genetic Variation in the Unicellular, Green Alga Chlamydomonas reinhardtii," PLOS ONE, Public Library of Science, vol. 7(7), pages 1-9, July.
29. Yuebin Wang & Wenqiang Li & Luxi Wang & Jiali Yan & Gang Lu & Ning Yang & Jieting Xu & Yuqing Wang & Songtao Gui & Gengshen Chen & Shuyan Li & Chengxiu Wu & Tingting Guo & Yingjie Xiao & Marilyn L. Wa, 2022. "Three types of genes underlying the Gametophyte factor1 locus cause unilateral cross incompatibility in maize," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
30. Mathieu Gautier & Denis Laloë & Katayoun Moazami-Goudarzi, 2010. "Insights into the Genetic History of French Cattle from Dense SNP Data on 47 Worldwide Breeds," PLOS ONE, Public Library of Science, vol. 5(9), pages 1-11, September.
31. Joanna L Davies & Jean-Baptiste Cazier & Malcolm G Dunlop & Richard S Houlston & Ian P Tomlinson & Chris C Holmes, 2012. "A Novel Test for Gene-Ancestry Interactions in Genome-Wide Association Data," PLOS ONE, Public Library of Science, vol. 7(12), pages 1-9, December.
32. Xiaofeng Cai & Xuepeng Sun & Chenxi Xu & Honghe Sun & Xiaoli Wang & Chenhui Ge & Zhonghua Zhang & Quanxi Wang & Zhangjun Fei & Chen Jiao & Quanhua Wang, 2021. "Genomic analyses provide insights into spinach domestication and the genetic basis of agronomic traits," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
33. Gwenna Breton & Lawrence Barham & George Mudenda & Himla Soodyall & Carina M. Schlebusch & Mattias Jakobsson, 2024. "BaTwa populations from Zambia retain ancestry of past hunter-gatherer groups," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
34. Lee, Anthony J. & Hibbs, Courtney & Wright, Margaret J. & Martin, Nicholas G. & Keller, Matthew C. & Zietsch, Brendan P., 2017. "Assessing the accuracy of perceptions of intelligence based on heritable facial features," Intelligence, Elsevier, vol. 64(C), pages 1-8.
35. Yedael Y Waldman & Arjun Biddanda & Natalie R Davidson & Paul Billing-Ross & Maya Dubrovsky & Christopher L Campbell & Carole Oddoux & Eitan Friedman & Gil Atzmon & Eran Halperin & Harry Ostrer & Alon, 2016. "The Genetics of Bene Israel from India Reveals Both Substantial Jewish and Indian Ancestry," PLOS ONE, Public Library of Science, vol. 11(3), pages 1-28, March.
36. Priya Moorjani & Nick Patterson & Po-Ru Loh & Mark Lipson & Péter Kisfali & Bela I Melegh & Michael Bonin & Ľudevít Kádaši & Olaf Rieß & Bonnie Berger & David Reich & Béla Melegh, 2013. "Reconstructing Roma History from Genome-Wide Data," PLOS ONE, Public Library of Science, vol. 8(3), pages 1-11, March.
37. Srirangan Sampath & Shambu Bhat & Simone Gupta & Ashley O’Connor & Andrew B West & Dan E Arking & Aravinda Chakravarti, 2013. "Defining the Contribution of CNTNAP2 to Autism Susceptibility," PLOS ONE, Public Library of Science, vol. 8(10), pages 1-1, October.
38. Eric R Londin & Margaret A Keller & Cathleen Maista & Gretchen Smith & Laura A Mamounas & Ran Zhang & Steven J Madore & Katrina Gwinn & Roderick A Corriveau, 2010. "CoAIMs: A Cost-Effective Panel of Ancestry Informative Markers for Determining Continental Origins," PLOS ONE, Public Library of Science, vol. 5(10), pages 1-12, October.
39. Wang Chaolong & Szpiech Zachary A & Degnan James H & Jakobsson Mattias & Pemberton Trevor J & Hardy John A & Singleton Andrew B & Rosenberg Noah A, 2010. "Comparing Spatial Maps of Human Population-Genetic Variation Using Procrustes Analysis," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-22, January.
40. Thompson Katherine L. & Linnen Catherine R. & Kubatko Laura, 2016. "Tree-based quantitative trait mapping in the presence of external covariates," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 15(6), pages 473-490, December.
41. Zhaoming Wang & Allan Hildesheim & Sophia S Wang & Rolando Herrero & Paula Gonzalez & Laurie Burdette & Amy Hutchinson & Gilles Thomas & Stephen J Chanock & Kai Yu, 2010. "Genetic Admixture and Population Substructure in Guanacaste Costa Rica," PLOS ONE, Public Library of Science, vol. 5(10), pages 1-10, October.
42. Douglas J. Kennett & Mark Lipson & Keith M. Prufer & David Mora-Marín & Richard J. George & Nadin Rohland & Mark Robinson & Willa R. Trask & Heather H. J. Edgar & Ethan C. Hill & Erin E. Ray & Paige L, 2022. "South-to-north migration preceded the advent of intensive farming in the Maya region," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
43. Esteban J Parra & Andrew Mazurek & Christopher R Gignoux & Alexandra Sockell & Michael Agostino & Andrew P Morris & Lauren E Petty & Craig L Hanis & Nancy J Cox & Adan Valladares-Salgado & Jennifer E , 2017. "Admixture mapping in two Mexican samples identifies significant associations of locus ancestry with triglyceride levels in the BUD13/ZNF259/APOA5 region and fine mapping points to rs964184 as the main," PLOS ONE, Public Library of Science, vol. 12(2), pages 1-16, February.
44. Petr Smýkal & Oldřich Trněný & Jan Brus & Pavel Hanáček & Abhishek Rathore & Rani Das Roma & Vilém Pechanec & Martin Duchoslav & Debjyoti Bhattacharyya & Michalis Bariotakis & Stergios Pirintsos & Jen, 2018. "Genetic structure of wild pea (Pisum sativum subsp. elatius) populations in the northern part of the Fertile Crescent reflects moderate cross-pollination and strong effect of geographic but not enviro," PLOS ONE, Public Library of Science, vol. 13(3), pages 1-22, March.
45. Fuencisla Matesanz & Antonio González-Pérez & Miguel Lucas & Serena Sanna & Javier Gayán & Elena Urcelay & Ilenia Zara & Maristella Pitzalis & María L Cavanillas & Rafael Arroyo & Magdalena Zoledziews, 2012. "Genome-Wide Association Study of Multiple Sclerosis Confirms a Novel Locus at 5p13.1," PLOS ONE, Public Library of Science, vol. 7(5), pages 1-8, May.
46. Ningbo Chen & Xiaoting Xia & Quratulain Hanif & Fengwei Zhang & Ruihua Dang & Bizhi Huang & Yang Lyu & Xiaoyu Luo & Hucai Zhang & Huixuan Yan & Shikang Wang & Fuwen Wang & Jialei Chen & Xiwen Guan & Y, 2023. "Global genetic diversity, introgression, and evolutionary adaptation of indicine cattle revealed by whole genome sequencing," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
47. Matthieu Bouaziz & Caroline Paccard & Mickael Guedj & Christophe Ambroise, 2012. "SHIPS: Spectral Hierarchical Clustering for the Inference of Population Structure in Genetic Studies," PLOS ONE, Public Library of Science, vol. 7(10), pages 1-17, October.
48. Maciej Chyleński & Przemysław Makarowicz & Anna Juras & Maja Krzewińska & Łukasz Pospieszny & Edvard Ehler & Agnieszka Breszka & Jacek Górski & Halina Taras & Anita Szczepanek & Marta Polańska & Piotr, 2023. "Patrilocality and hunter-gatherer-related ancestry of populations in East-Central Europe during the Middle Bronze Age," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
49. Thomas Charlon & Manuel Martínez-Bueno & Lara Bossini-Castillo & F David Carmona & Alessandro Di Cara & Jérôme Wojcik & Sviatoslav Voloshynovskiy & Javier Martín & Marta E Alarcón-Riquelme, 2016. "Single Nucleotide Polymorphism Clustering in Systemic Autoimmune Diseases," PLOS ONE, Public Library of Science, vol. 11(8), pages 1-10, August.
50. Bryc, Katarzyna & Bryc, Wlodek & Silverstein, Jack W., 2013. "Separation of the largest eigenvalues in eigenanalysis of genotype data from discrete subpopulations," Theoretical Population Biology, Elsevier, vol. 89(C), pages 34-43.
51. Diana Chang & Feng Gao & Andrea Slavney & Li Ma & Yedael Y Waldman & Aaron J Sams & Paul Billing-Ross & Aviv Madar & Richard Spritz & Alon Keinan, 2014. "Accounting for eXentricities: Analysis of the X Chromosome in GWAS Reveals X-Linked Genes Implicated in Autoimmune Diseases," PLOS ONE, Public Library of Science, vol. 9(12), pages 1-31, December.
52. John B. Holmes & Matthew R. Schofield & Richard J. Barker, 2022. "Pólya‐gamma data augmentation and latent variable models for multivariate binomial data," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 71(1), pages 194-218, January.
53. Binbin Wang & Yong-Biao Zhang & Feng Zhang & Hongbin Lin & Xumin Wang & Ning Wan & Zhenqing Ye & Haiyu Weng & Lili Zhang & Xin Li & Jiangwei Yan & Panpan Wang & Tingting Wu & Longfei Cheng & Jing Wang, 2011. "On the Origin of Tibetans and Their Genetic Basis in Adapting High-Altitude Environments," PLOS ONE, Public Library of Science, vol. 6(2), pages 1-10, February.
54. Jacob M Keaton & Jacklyn N Hellwege & Maggie C Y Ng & Nicholette D Palmer & James S Pankow & Myriam Fornage & James G Wilson & Adolfo Correa & Laura J Rasmussen-Torvik & Jerome I Rotter & Yii-Der I Ch, 2016. "Genome-Wide Interaction with Insulin Secretion Loci Reveals Novel Loci for Type 2 Diabetes in African Americans," PLOS ONE, Public Library of Science, vol. 11(7), pages 1-12, July.
55. Jacobo Pardo-Seco & Alberto Gómez-Carballa & Jorge Amigo & Federico Martinón-Torres & Antonio Salas, 2014. "A Genome-Wide Study of Modern-Day Tuscans: Revisiting Herodotus's Theory on the Origin of the Etruscans," PLOS ONE, Public Library of Science, vol. 9(9), pages 1-11, September.
56. Peristera Paschou & Petros Drineas & Jamey Lewis & Caroline M Nievergelt & Deborah A Nickerson & Joshua D Smith & Paul M Ridker & Daniel I Chasman & Ronald M Krauss & Elad Ziv, 2008. "Tracing Sub-Structure in the European American Population with PCA-Informative Markers," PLOS Genetics, Public Library of Science, vol. 4(7), pages 1-13, July.
57. Andrey V Khrunin & Denis V Khokhrin & Irina N Filippova & Tõnu Esko & Mari Nelis & Natalia A Bebyakova & Natalia L Bolotova & Janis Klovins & Liene Nikitina-Zake & Karola Rehnström & Samuli Ripatti & , 2013. "A Genome-Wide Analysis of Populations from European Russia Reveals a New Pole of Genetic Diversity in Northern Europe," PLOS ONE, Public Library of Science, vol. 8(3), pages 1-9, March.
58. Irene H. Flønes & Lilah Toker & Dagny Ann Sandnes & Martina Castelli & Sepideh Mostafavi & Njål Lura & Omnia Shadad & Erika Fernandez-Vizarra & Cèlia Painous & Alexandra Pérez-Soriano & Yaroslau Compt, 2024. "Mitochondrial complex I deficiency stratifies idiopathic Parkinson’s disease," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
59. Sam Tallman & Maria das Dores Sungo & Sílvio Saranga & Sandra Beleza, 2023. "Whole genomes from Angola and Mozambique inform about the origins and dispersals of major African migrations," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
60. Kai Yu & Zhaoming Wang & Qizhai Li & Sholom Wacholder & David J Hunter & Robert N Hoover & Stephen Chanock & Gilles Thomas, 2008. "Population Substructure and Control Selection in Genome-Wide Association Studies," PLOS ONE, Public Library of Science, vol. 3(7), pages 1-14, July.
61. Jason Sawler & Bruce Reisch & Mallikarjuna K Aradhya & Bernard Prins & Gan-Yuan Zhong & Heidi Schwaninger & Charles Simon & Edward Buckler & Sean Myles, 2013. "Genomics Assisted Ancestry Deconvolution in Grape," PLOS ONE, Public Library of Science, vol. 8(11), pages 1-1, November.
62. Ilja M Nolte & Chris Wallace & Stephen J Newhouse & Daryl Waggott & Jingyuan Fu & Nicole Soranzo & Rhian Gwilliam & Panos Deloukas & Irina Savelieva & Dongling Zheng & Chrysoula Dalageorgou & Martin F, 2009. "Common Genetic Variation Near the Phospholamban Gene Is Associated with Cardiac Repolarisation: Meta-Analysis of Three Genome-Wide Association Studies," PLOS ONE, Public Library of Science, vol. 4(7), pages 1-10, July.
63. Michael Greenacre & Patrick J. F Groenen & Trevor Hastie & Alfonso Iodice d’Enza & Angelos Markos & Elena Tuzhilina, 2023. "Principal component analysis," Economics Working Papers 1856, Department of Economics and Business, Universitat Pompeu Fabra.
64. Hoicheong Siu & Li Jin & Momiao Xiong, 2012. "Manifold Learning for Human Population Structure Studies," PLOS ONE, Public Library of Science, vol. 7(1), pages 1-18, January.
65. Duforet-Frebourg, Nicolas & Slatkin, Montgomery, 2016. "Isolation-by-distance-and-time in a stepping-stone model," Theoretical Population Biology, Elsevier, vol. 108(C), pages 24-35.
66. Lucia Vernerova & Frantisek Spoutil & Miroslav Vlcek & Katarina Krskova & Adela Penesova & Milada Meskova & Andrea Marko & Katarina Raslova & Branislav Vohnout & Jozef Rovensky & Zdenko Killinger & Iv, 2016. "A Combination of CD28 (rs1980422) and IRF5 (rs10488631) Polymorphisms Is Associated with Seropositivity in Rheumatoid Arthritis: A Case Control Study," PLOS ONE, Public Library of Science, vol. 11(4), pages 1-15, April.
67. Kevin Nota & Jonatan Klaminder & Pascal Milesi & Richard Bindler & Alessandro Nobile & Tamara Steijn & Stefan Bertilsson & Brita Svensson & Shun K. Hirota & Ayumi Matsuo & Urban Gunnarsson & Heikki Se, 2022. "Norway spruce postglacial recolonization of Fennoscandia," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
68. Elodie Persyn & Richard Redon & Lise Bellanger & Christian Dina, 2018. "The impact of a fine-scale population stratification on rare variant association test results," PLOS ONE, Public Library of Science, vol. 13(12), pages 1-17, December.
69. Andre Krumel Portella & Afroditi Papantoni & Catherine Paquet & Spencer Moore & Keri Shiels Rosch & Stewart Mostofsky & Richard S Lee & Kimberly R Smith & Robert Levitan & Patricia Pelufo Silveira & S, 2020. "Predicted DRD4 prefrontal gene expression moderates snack intake and stress perception in response to the environment in adolescents," PLOS ONE, Public Library of Science, vol. 15(6), pages 1-20, June.
70. Luis M Real & Agustín Ruiz & Javier Gayán & Antonio González-Pérez & María E Sáez & Reposo Ramírez-Lorca & Francisco J Morón & Juan Velasco & Ruth Marginet-Flinch & Eva Musulén & José M Carrasco & Con, 2014. "A Colorectal Cancer Susceptibility New Variant at 4q26 in the Spanish Population Identified by Genome-Wide Association Analysis," PLOS ONE, Public Library of Science, vol. 9(6), pages 1-11, June.
71. Gil McVean, 2009. "A Genealogical Interpretation of Principal Components Analysis," PLOS Genetics, Public Library of Science, vol. 5(10), pages 1-10, October.
72. Xiao Zhang & Mark Blaxter & Jonathan M. D. Wood & Alan Tracey & Shane McCarthy & Peter Thorpe & Jack G. Rayner & Shangzhe Zhang & Kirstin L. Sikkink & Susan L. Balenger & Nathan W. Bailey, 2024. "Temporal genomics in Hawaiian crickets reveals compensatory intragenomic coadaptation during adaptive evolution," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
73. Christos Miliotis & Yuling Ma & Xanthi-Lida Katopodi & Dimitra Karagkouni & Eleni Kanata & Kaia Mattioli & Nikolas Kalavros & Yered H. Pita-Juárez & Felipe Batalini & Varune R. Ramnarine & Shivani Nan, 2024. "Determinants of gastric cancer immune escape identified from non-coding immune-landscape quantitative trait loci," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
74. Ze Yan & Ji Yang & Wen-Tian Wei & Ming-Liang Zhou & Dong-Xin Mo & Xing Wan & Rui Ma & Mei-Ming Wu & Jia-Hui Huang & Ya-Jing Liu & Feng-Hua Lv & Meng-Hua Li, 2024. "A time-resolved multi-omics atlas of transcriptional regulation in response to high-altitude hypoxia across whole-body tissues," Nature Communications, Nature, vol. 15(1), pages 1-22, December.
75. Alana L Jacobson & Brian A Nault & Edward L Vargo & George G Kennedy, 2016. "Restricted Gene Flow among Lineages of Thrips tabaci Supports Genetic Divergence Among Cryptic Species Groups," PLOS ONE, Public Library of Science, vol. 11(9), pages 1-16, September.
76. Ananyo Choudhury & Jean-Tristan Brandenburg & Tinashe Chikowore & Dhriti Sengupta & Palwende Romuald Boua & Nigel J. Crowther & Godfred Agongo & Gershim Asiki & F. Xavier Gómez-Olivé & Isaac Kisiangan, 2022. "Meta-analysis of sub-Saharan African studies provides insights into genetic architecture of lipid traits," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
77. Elena Arciero & Sufyan A. Dogra & Daniel S. Malawsky & Massimo Mezzavilla & Theofanis Tsismentzoglou & Qin Qin Huang & Karen A. Hunt & Dan Mason & Saghira Malik Sharif & David A. Heel & Eamonn Sherida, 2021. "Fine-scale population structure and demographic history of British Pakistanis," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
78. Thomas Bourquard & Kwanghyuk Lee & Ismael Al-Ramahi & Minh Pham & Dillon Shapiro & Yashwanth Lagisetty & Shirin Soleimani & Samantha Mota & Kevin Wilhelm & Maryam Samieinasab & Young Won Kim & Eunna H, 2023. "Functional variants identify sex-specific genes and pathways in Alzheimer’s Disease," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
79. Ani Manichaikul & Walter Palmas & Carlos J Rodriguez & Carmen A Peralta & Jasmin Divers & Xiuqing Guo & Wei-Min Chen & Quenna Wong & Kayleen Williams & Kathleen F Kerr & Kent D Taylor & Michael Y Tsai, 2012. "Population Structure of Hispanics in the United States: The Multi-Ethnic Study of Atherosclerosis," PLOS Genetics, Public Library of Science, vol. 8(4), pages 1-14, April.
80. Guindon, Stéphane & Guo, Hongbin & Welch, David, 2016. "Demographic inference under the coalescent in a spatial continuum," Theoretical Population Biology, Elsevier, vol. 111(C), pages 43-50.
81. David Berthier & Moana Peylhard & Guiguigbaza-Kossigan Dayo & Laurence Flori & Souleymane Sylla & Seydou Bolly & Hassane Sakande & Isabelle Chantal & Sophie Thevenon, 2015. "A Comparison of Phenotypic Traits Related to Trypanotolerance in Five West African Cattle Breeds Highlights the Value of Shorthorn Taurine Breeds," PLOS ONE, Public Library of Science, vol. 10(5), pages 1-21, May.
82. Lindsay Fernández-Rhodes & Jennifer R Malinowski & Yujie Wang & Ran Tao & Nathan Pankratz & Janina M Jeff & Sachiko Yoneyama & Cara L Carty & V Wendy Setiawan & Loic Le Marchand & Christopher Haiman &, 2018. "The genetic underpinnings of variation in ages at menarche and natural menopause among women from the multi-ethnic Population Architecture using Genomics and Epidemiology (PAGE) Study: A trans-ethnic ," PLOS ONE, Public Library of Science, vol. 13(7), pages 1-21, July.
83. Selina Carlhoff & Wibhu Kutanan & Adam B. Rohrlach & Cosimo Posth & Mark Stoneking & Kathrin Nägele & Rasmi Shoocongdej & Johannes Krause, 2023. "Genomic portrait and relatedness patterns of the Iron Age Log Coffin culture in northwestern Thailand," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
84. Markus Neuditschko & Mehar S Khatkar & Herman W Raadsma, 2012. "NetView: A High-Definition Network-Visualization Approach to Detect Fine-Scale Population Structures from Genome-Wide Patterns of Variation," PLOS ONE, Public Library of Science, vol. 7(10), pages 1-13, October.
85. Hélène Choquet & Jay Kasberger & Ajna Hamidovic & Eric Jorgenson, 2013. "Contribution of Common PCSK1 Genetic Variants to Obesity in 8,359 Subjects from Multi-Ethnic American Population," PLOS ONE, Public Library of Science, vol. 8(2), pages 1-7, February.
86. Pierre Luisi & Angelina García & Juan Manuel Berros & Josefina M B Motti & Darío A Demarchi & Emma Alfaro & Eliana Aquilano & Carina Argüelles & Sergio Avena & Graciela Bailliet & Julieta Beltramo & C, 2020. "Fine-scale genomic analyses of admixed individuals reveal unrecognized genetic ancestry components in Argentina," PLOS ONE, Public Library of Science, vol. 15(7), pages 1-30, July.
87. Peña-Malavera Andrea & Bruno Cecilia & Fernandez Elmer & Balzarini Monica, 2014. "Comparison of algorithms to infer genetic population structure from unlinked molecular markers," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 13(4), pages 391-402, August.
88. Marie Louis & Petra Korlević & Milaja Nykänen & Frederick Archer & Simon Berrow & Andrew Brownlow & Eline D. Lorenzen & Joanne O’Brien & Klaas Post & Fernando Racimo & Emer Rogan & Patricia E. Rosel &, 2023. "Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
89. Kendra A. Sirak & Daniel M. Fernandes & Mark Lipson & Swapan Mallick & Matthew Mah & Iñigo Olalde & Harald Ringbauer & Nadin Rohland & Carla S. Hadden & Éadaoin Harney & Nicole Adamski & Rebecca Berna, 2021. "Social stratification without genetic differentiation at the site of Kulubnarti in Christian Period Nubia," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
90. Lejla Kovacevic & Kristiina Tambets & Anne-Mai Ilumäe & Alena Kushniarevich & Bayazit Yunusbayev & Anu Solnik & Tamer Bego & Dragan Primorac & Vedrana Skaro & Andreja Leskovac & Zlatko Jakovski & Katj, 2014. "Standing at the Gateway to Europe - The Genetic Structure of Western Balkan Populations Based on Autosomal and Haploid Markers," PLOS ONE, Public Library of Science, vol. 9(8), pages 1-15, August.
91. Yamagata University Genomic Cohort Consortium (YUGCC), 2014. "Pleiotropic Effect of Common Variants at ABO Glycosyltranferase Locus in 9q32 on Plasma Levels of Pancreatic Lipase and Angiotensin Converting Enzyme," PLOS ONE, Public Library of Science, vol. 9(2), pages 1-12, February.
92. Mathilde André & Nicolas Brucato & Georgi Hudjasov & Vasili Pankratov & Danat Yermakovich & Francesco Montinaro & Rita Kreevan & Jason Kariwiga & John Muke & Anne Boland & Jean-François Deleuze & Vinc, 2024. "Positive selection in the genomes of two Papua New Guinean populations at distinct altitude levels," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
93. Edoardo Saccenti & Marieke E. Timmerman, 2017. "Considering Horn’s Parallel Analysis from a Random Matrix Theory Point of View," Psychometrika, Springer;The Psychometric Society, vol. 82(1), pages 186-209, March.
94. Buschbom, Jutta, 2018. "Exploring and validating statistical reliability in forensic conservation genetics," Thünen Reports 63, Johann Heinrich von Thünen Institute, Federal Research Institute for Rural Areas, Forestry and Fisheries.
95. Aman Agrawal & Alec M Chiu & Minh Le & Eran Halperin & Sriram Sankararaman, 2020. "Scalable probabilistic PCA for large-scale genetic variation data," PLOS Genetics, Public Library of Science, vol. 16(5), pages 1-19, May.
96. Chi-Chun Liu & David Witonsky & Anna Gosling & Ju Hyeon Lee & Harald Ringbauer & Richard Hagan & Nisha Patel & Raphaela Stahl & John Novembre & Mark Aldenderfer & Christina Warinner & Anna Di Rienzo &, 2022. "Ancient genomes from the Himalayas illuminate the genetic history of Tibetans and their Tibeto-Burman speaking neighbors," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
97. Eric P Xing & Ross E Curtis & Georg Schoenherr & Seunghak Lee & Junming Yin & Kriti Puniyani & Wei Wu & Peter Kinnaird, 2014. "GWAS in a Box: Statistical and Visual Analytics of Structured Associations via GenAMap," PLOS ONE, Public Library of Science, vol. 9(6), pages 1-19, June.
98. Abhinav Thakral & John JW. Lee & Tianzhichao Hou & Katrina Hueniken & Tom Dudding & Mark Gormley & Shama Virani & Andrew Olshan & Brenda Diergaarde & Andrew R. Ness & Tim Waterboer & Karl Smith-Byrne , 2024. "Smoking and alcohol by HPV status in head and neck cancer: a Mendelian randomization study," Nature Communications, Nature, vol. 15(1), pages 1-9, December.
99. Gad Abraham & Michael Inouye, 2014. "Fast Principal Component Analysis of Large-Scale Genome-Wide Data," PLOS ONE, Public Library of Science, vol. 9(4), pages 1-5, April.
100. Thalida E Arpawong & Neil Pendleton & Krisztina Mekli & John J McArdle & Margaret Gatz & Chris Armoskus & James A Knowles & Carol A Prescott, 2017. "Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort," PLOS ONE, Public Library of Science, vol. 12(8), pages 1-27, August.
101. Zhao Huaqing & Rebbeck Timothy R. & Mitra Nandita, 2012. "Analyzing Genetic Association Studies with an Extended Propensity Score Approach," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 11(5), pages 1-24, October.
102. Matthieu Marbac & Mohammed Sedki & Tienne Patin, 2020. "Variable Selection for Mixed Data Clustering: Application in Human Population Genomics," Journal of Classification, Springer;The Classification Society, vol. 37(1), pages 124-142, April.
103. Jayshree Advani & Puja A. Mehta & Andrew R. Hamel & Sudeep Mehrotra & Christina Kiel & Tobias Strunz & Ximena Corso-Díaz & Madeline Kwicklis & Freekje Asten & Rinki Ratnapriya & Emily Y. Chew & Dena G, 2024. "QTL mapping of human retina DNA methylation identifies 87 gene-epigenome interactions in age-related macular degeneration," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
104. Diana Chang & Alon Keinan, 2014. "Principal Component Analysis Characterizes Shared Pathogenetics from Genome-Wide Association Studies," PLOS Computational Biology, Public Library of Science, vol. 10(9), pages 1-14, September.
105. Ronald J Nowling & Krystal R Manke & Scott J Emrich, 2020. "Detecting inversions with PCA in the presence of population structure," PLOS ONE, Public Library of Science, vol. 15(10), pages 1-20, October.
106. Yuyang Xu & Zhonghua Liu & Jianfeng Yao, 2023. "An eigenvalue ratio approach to inferring population structure from whole genome sequencing data," Biometrics, The International Biometric Society, vol. 79(2), pages 891-902, June.