Analyzes of pan-genome and resequencing atlas unveil the genetic basis of jujube domestication
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DOI: 10.1038/s41467-024-53718-z
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- Hongbo Li & Shenhao Wang & Sen Chai & Zhiquan Yang & Qiqi Zhang & Hongjia Xin & Yuanchao Xu & Shengnan Lin & Xinxiu Chen & Zhiwang Yao & Qingyong Yang & Zhangjun Fei & Sanwen Huang & Zhonghua Zhang, 2022. "Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
- Yao Zhou & Zhiyang Zhang & Zhigui Bao & Hongbo Li & Yaqing Lyu & Yanjun Zan & Yaoyao Wu & Lin Cheng & Yuhan Fang & Kun Wu & Jinzhe Zhang & Hongjun Lyu & Tao Lin & Qiang Gao & Surya Saha & Lukas Muelle, 2022. "Graph pangenome captures missing heritability and empowers tomato breeding," Nature, Nature, vol. 606(7914), pages 527-534, June.
- Nick Patterson & Alkes L Price & David Reich, 2006. "Population Structure and Eigenanalysis," PLOS Genetics, Public Library of Science, vol. 2(12), pages 1-20, December.
- Meng-Jun Liu & Jin Zhao & Qing-Le Cai & Guo-Cheng Liu & Jiu-Rui Wang & Zhi-Hui Zhao & Ping Liu & Li Dai & Guijun Yan & Wen-Jiang Wang & Xian-Song Li & Yan Chen & Yu-Dong Sun & Zhi-Guo Liu & Min-Juan L, 2014. "The complex jujube genome provides insights into fruit tree biology," Nature Communications, Nature, vol. 5(1), pages 1-12, December.
- Josh Abramson & Jonas Adler & Jack Dunger & Richard Evans & Tim Green & Alexander Pritzel & Olaf Ronneberger & Lindsay Willmore & Andrew J. Ballard & Joshua Bambrick & Sebastian W. Bodenstein & David , 2024. "Accurate structure prediction of biomolecular interactions with AlphaFold 3," Nature, Nature, vol. 630(8016), pages 493-500, June.
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