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Oracle and Adaptive Compound Decision Rules for False Discovery Rate Control

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Cited by:

  1. Shonosuke Sugasawa & Hisashi Noma, 2021. "Efficient screening of predictive biomarkers for individual treatment selection," Biometrics, The International Biometric Society, vol. 77(1), pages 249-257, March.
  2. Du, Lilun & Wen, Mengtao, 2023. "False discovery rate approach to dynamic change detection," Journal of Multivariate Analysis, Elsevier, vol. 198(C).
  3. Nikolaos Ignatiadis & Wolfgang Huber, 2021. "Covariate powered cross‐weighted multiple testing," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 83(4), pages 720-751, September.
  4. Habiger, Joshua D. & Peña, Edsel A., 2014. "Compound p-value statistics for multiple testing procedures," Journal of Multivariate Analysis, Elsevier, vol. 126(C), pages 153-166.
  5. Pallavi Basu & Luella Fu & Alessio Saretto & Wenguang Sun, 2021. "Empirical Bayes Control of the False Discovery Exceedance," Working Papers 2115, Federal Reserve Bank of Dallas.
  6. Alejandro Ochoa & John D Storey & Manuel Llinás & Mona Singh, 2015. "Beyond the E-Value: Stratified Statistics for Protein Domain Prediction," PLOS Computational Biology, Public Library of Science, vol. 11(11), pages 1-21, November.
  7. Zhao, Sihai Dave & Cai, T. Tony & Li, Hongzhe, 2017. "Optimal detection of weak positive latent dependence between two sequences of multiple tests," Journal of Multivariate Analysis, Elsevier, vol. 160(C), pages 169-184.
  8. Hai Shu & Bin Nan & Robert Koeppe, 2015. "Multiple testing for neuroimaging via hidden Markov random field," Biometrics, The International Biometric Society, vol. 71(3), pages 741-750, September.
  9. Jiaying Gu & Roger Koenker, 2016. "On a Problem of Robbins," International Statistical Review, International Statistical Institute, vol. 84(2), pages 224-244, August.
  10. Chen, Yunxiao & Li, Xiaoou, 2023. "Compound sequential change-point detection in parallel data streams," LSE Research Online Documents on Economics 111010, London School of Economics and Political Science, LSE Library.
  11. Zhaoyang Tian & Kun Liang & Pengfei Li, 2021. "A powerful procedure that controls the false discovery rate with directional information," Biometrics, The International Biometric Society, vol. 77(1), pages 212-222, March.
  12. Youngjo Lee & Jan F. Bjørnstad, 2013. "Extended likelihood approach to large-scale multiple testing," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 75(3), pages 553-575, June.
  13. Joungyoun Kim & Donghyeon Yu & Johan Lim & Joong-Ho Won, 2018. "A peeling algorithm for multiple testing on a random field," Computational Statistics, Springer, vol. 33(1), pages 503-525, March.
  14. Pengfei Wang & Wensheng Zhu, 2022. "Large‐scale covariate‐assisted two‐sample inference under dependence," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 49(4), pages 1421-1447, December.
  15. Shiyun Chen & Ery Arias-Castro, 2021. "On the power of some sequential multiple testing procedures," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 73(2), pages 311-336, April.
  16. Long Qu & Dan Nettleton & Jack C. M. Dekkers, 2012. "Improved Estimation of the Noncentrality Parameter Distribution from a Large Number of t-Statistics, with Applications to False Discovery Rate Estimation in Microarray Data Analysis," Biometrics, The International Biometric Society, vol. 68(4), pages 1178-1187, December.
  17. Jiaying Gu & Roger Koenker, 2017. "Rebayes: an R package for empirical bayes mixture methods," CeMMAP working papers CWP37/17, Centre for Microdata Methods and Practice, Institute for Fiscal Studies.
  18. Saharon Rosset & Ruth Heller & Amichai Painsky & Ehud Aharoni, 2022. "Optimal and maximin procedures for multiple testing problems," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 84(4), pages 1105-1128, September.
  19. Lee, Donghwan & Lee, Youngjo, 2016. "Extended likelihood approach to multiple testing with directional error control under a hidden Markov random field model," Journal of Multivariate Analysis, Elsevier, vol. 151(C), pages 1-13.
  20. Helmut Finner & Veronika Gontscharuk, 2009. "Controlling the familywise error rate with plug‐in estimator for the proportion of true null hypotheses," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(5), pages 1031-1048, November.
  21. Fryzlewicz, Piotr & Ombao, Hernando, 2009. "Consistent classification of non-stationary time series using stochastic wavelet representations," LSE Research Online Documents on Economics 25162, London School of Economics and Political Science, LSE Library.
  22. Edsel Peña & Joshua Habiger & Wensong Wu, 2015. "Classes of multiple decision functions strongly controlling FWER and FDR," Metrika: International Journal for Theoretical and Applied Statistics, Springer, vol. 78(5), pages 563-595, July.
  23. Dennis Leung & Wenguang Sun, 2022. "ZAP: Z$$ Z $$‐value adaptive procedures for false discovery rate control with side information," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 84(5), pages 1886-1946, November.
  24. Daniel Yekutieli, 2015. "Bayesian tests for composite alternative hypotheses in cross-tabulated data," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 24(2), pages 287-301, June.
  25. Jiaying Gu & Roger Koenker, 2023. "Invidious Comparisons: Ranking and Selection as Compound Decisions," Econometrica, Econometric Society, vol. 91(1), pages 1-41, January.
  26. Jeng, X. Jessie & Chen, Xiongzhi, 2019. "Predictor ranking and false discovery proportion control in high-dimensional regression," Journal of Multivariate Analysis, Elsevier, vol. 171(C), pages 163-175.
  27. Zhao, Haibing & Fung, Wing Kam, 2016. "A powerful FDR control procedure for multiple hypotheses," Computational Statistics & Data Analysis, Elsevier, vol. 98(C), pages 60-70.
  28. Chen, Yunxiao & Lu, Yan & Moustaki, Irini, 2022. "Detection of two-way outliers in multivariate data and application to cheating detection in educational tests," LSE Research Online Documents on Economics 112499, London School of Economics and Political Science, LSE Library.
  29. T. Tony Cai & Weidong Liu, 2016. "Large-Scale Multiple Testing of Correlations," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(513), pages 229-240, March.
  30. Zhigen Zhao, 2022. "Where to find needles in a haystack?," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 31(1), pages 148-174, March.
  31. Izmirlian, Grant, 2020. "Strong consistency and asymptotic normality for quantities related to the Benjamini–Hochberg false discovery rate procedure," Statistics & Probability Letters, Elsevier, vol. 160(C).
  32. Jessie Jeng, X., 2016. "Detecting weak signals in high dimensions," Journal of Multivariate Analysis, Elsevier, vol. 147(C), pages 234-246.
  33. T. Tony Cai & Wenguang Sun & Weinan Wang, 2019. "Covariate‐assisted ranking and screening for large‐scale two‐sample inference," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 81(2), pages 187-234, April.
  34. Ghosh Debashis, 2012. "Incorporating the Empirical Null Hypothesis into the Benjamini-Hochberg Procedure," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 11(4), pages 1-21, July.
  35. Xiaoquan Wen, 2017. "Robust Bayesian FDR Control Using Bayes Factors, with Applications to Multi-tissue eQTL Discovery," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 9(1), pages 28-49, June.
  36. Ruth Heller & Saharon Rosset, 2021. "Optimal control of false discovery criteria in the two‐group model," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 83(1), pages 133-155, February.
  37. Joshua Habiger & David Watts & Michael Anderson, 2017. "Multiple testing with heterogeneous multinomial distributions," Biometrics, The International Biometric Society, vol. 73(2), pages 562-570, June.
  38. T. Tony Cai & Wenguang Sun, 2017. "Optimal screening and discovery of sparse signals with applications to multistage high throughput studies," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 79(1), pages 197-223, January.
  39. Jiaying Gu & Roger Koenker, 2017. "Rebayes: an R package for empirical bayes mixture methods," CeMMAP working papers 37/17, Institute for Fiscal Studies.
  40. Tingting Cui & Pengfei Wang & Wensheng Zhu, 2021. "Covariate-adjusted multiple testing in genome-wide association studies via factorial hidden Markov models," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 30(3), pages 737-757, September.
  41. Cai, Qingyun, 2018. "A scoring criterion for rejection of clustered p-values," Computational Statistics & Data Analysis, Elsevier, vol. 121(C), pages 180-189.
  42. Haibing Zhao & Wing Kam Fung, 2018. "Controlling mixed directional false discovery rate in multidimensional decisions with applications to microarray studies," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 27(2), pages 316-337, June.
  43. Li Wang, 2019. "Weighted multiple testing procedure for grouped hypotheses with k-FWER control," Computational Statistics, Springer, vol. 34(2), pages 885-909, June.
  44. Ni, Huangjing & Qin, Jiaolong & Zhou, Luping & Zhao, Zhigen & Wang, Jun & Hou, Fengzhen, 2017. "Network analysis in detection of early-stage mild cognitive impairment," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 478(C), pages 113-119.
  45. Joshua Habiger & Edsel Peña, 2011. "Randomised -values and nonparametric procedures in multiple testing," Journal of Nonparametric Statistics, Taylor & Francis Journals, vol. 23(3), pages 583-604.
  46. Won, Joong-Ho & Lim, Johan & Yu, Donghyeon & Kim, Byung Soo & Kim, Kyunga, 2014. "Monotone false discovery rate," Statistics & Probability Letters, Elsevier, vol. 87(C), pages 86-93.
  47. Wenguang Sun & T. Tony Cai, 2009. "Large‐scale multiple testing under dependence," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 393-424, April.
  48. Jiaying Gu & Roger Koenker, 2020. "Invidious Comparisons: Ranking and Selection as Compound Decisions," Papers 2012.12550, arXiv.org, revised Sep 2021.
  49. Noirrit Kiran Chandra & Sourabh Bhattacharya, 2021. "Asymptotic theory of dependent Bayesian multiple testing procedures under possible model misspecification," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 73(5), pages 891-920, October.
  50. Gómez-Villegas Miguel A. & Salazar Isabel & Sanz Luis, 2014. "A Bayesian decision procedure for testing multiple hypotheses in DNA microarray experiments," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 13(1), pages 49-65, February.
  51. Haibing Zhao & Xinping Cui, 2020. "Constructing confidence intervals for selected parameters," Biometrics, The International Biometric Society, vol. 76(4), pages 1098-1108, December.
  52. Cipolli III, William & Hanson, Timothy & McLain, Alexander C., 2016. "Bayesian nonparametric multiple testing," Computational Statistics & Data Analysis, Elsevier, vol. 101(C), pages 64-79.
  53. Long Qu & Dan Nettleton & Jack C. M. Dekkers, 2012. "A Hierarchical Semiparametric Model for Incorporating Intergene Information for Analysis of Genomic Data," Biometrics, The International Biometric Society, vol. 68(4), pages 1168-1177, December.
  54. He, Li & Sarkar, Sanat K. & Zhao, Zhigen, 2015. "Capturing the severity of type II errors in high-dimensional multiple testing," Journal of Multivariate Analysis, Elsevier, vol. 142(C), pages 106-116.
  55. Pan, Lanfeng & Li, Yehua & He, Kevin & Li, Yanming & Li, Yi, 2020. "Generalized linear mixed models with Gaussian mixture random effects: Inference and application," Journal of Multivariate Analysis, Elsevier, vol. 175(C).
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