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A Hierarchical Semiparametric Model for Incorporating Intergene Information for Analysis of Genomic Data

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  • Long Qu
  • Dan Nettleton
  • Jack C. M. Dekkers

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  • Long Qu & Dan Nettleton & Jack C. M. Dekkers, 2012. "A Hierarchical Semiparametric Model for Incorporating Intergene Information for Analysis of Genomic Data," Biometrics, The International Biometric Society, vol. 68(4), pages 1168-1177, December.
    • Handle: RePEc:bla:biomet:v:68:y:2012:i:4:p:1168-1177
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    File URL: http://hdl.handle.net/10.1111/j.1541-0420.2012.01778.x
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    References listed on IDEAS

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    1. David Ruppert & Dan Nettleton & J. T. Gene Hwang, 2007. "Exploring the Information in p-Values for the Analysis and Planning of Multiple-Test Experiments," Biometrics, The International Biometric Society, vol. 63(2), pages 483-495, June.
    2. Wei Pan & Benhuai Xie & Xiaotong Shen, 2010. "Incorporating Predictor Network in Penalized Regression with Application to Microarray Data," Biometrics, The International Biometric Society, vol. 66(2), pages 474-484, June.
    3. Gerda Claeskens & Tatyana Krivobokova & Jean D. Opsomer, 2009. "Asymptotic properties of penalized spline estimators," Biometrika, Biometrika Trust, vol. 96(3), pages 529-544.
    4. Smyth Gordon K, 2004. "Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 3(1), pages 1-28, February.
    5. Sun, Wenguang & Cai, T. Tony, 2007. "Oracle and Adaptive Compound Decision Rules for False Discovery Rate Control," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 901-912, September.
    6. Liang, Kun & Nettleton, Dan, 2010. "A Hidden Markov Model Approach to Testing Multiple Hypotheses on a Tree-Transformed Gene Ontology Graph," Journal of the American Statistical Association, American Statistical Association, vol. 105(492), pages 1444-1454.
    7. Efron, Bradley, 2004. "Large-Scale Simultaneous Hypothesis Testing: The Choice of a Null Hypothesis," Journal of the American Statistical Association, American Statistical Association, vol. 99, pages 96-104, January.
    8. Wei Pan, 2006. "Incorporating gene functional annotations in detecting differential gene expression," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 55(3), pages 301-316, May.
    9. Peng Wei & Wei Pan, 2010. "Network‐based genomic discovery: application and comparison of Markov random‐field models," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 59(1), pages 105-125, January.
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