IDEAS home Printed from https://ideas.repec.org/r/nat/nature/v402y1999i6761d10.1038_35011540.html
   My bibliography  Save this item

From molecular to modular cell biology

Citations

Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
as


Cited by:

  1. Alexander Veremyev & Oleg A. Prokopyev & Sergiy Butenko & Eduardo L. Pasiliao, 2016. "Exact MIP-based approaches for finding maximum quasi-cliques and dense subgraphs," Computational Optimization and Applications, Springer, vol. 64(1), pages 177-214, May.
  2. Lazaros K Gallos & Fabricio Q Potiguar & José S Andrade Jr & Hernan A Makse, 2013. "IMDB Network Revisited: Unveiling Fractal and Modular Properties from a Typical Small-World Network," PLOS ONE, Public Library of Science, vol. 8(6), pages 1-8, June.
  3. Andras Gyorgy, 2023. "Competition and evolutionary selection among core regulatory motifs in gene expression control," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
  4. Andriani, Pierpaolo & Carignani, Giuseppe, 2014. "Modular exaptation: A missing link in the synthesis of artificial form," Research Policy, Elsevier, vol. 43(9), pages 1608-1620.
  5. Sanjana Gupta & Robin E C Lee & James R Faeder, 2020. "Parallel Tempering with Lasso for model reduction in systems biology," PLOS Computational Biology, Public Library of Science, vol. 16(3), pages 1-22, March.
  6. T. Ochiai & J. C. Nacher, 2007. "Stochastic analysis of autoregulatory gene expression dynamics," Mathematical and Computer Modelling of Dynamical Systems, Taylor & Francis Journals, vol. 14(4), pages 377-388, November.
  7. Nicola Bellomo & Richard Bingham & Mark A.J. Chaplain & Giovanni Dosi & Guido Forni & Damian A. Knopoff & John Lowengrub & Reidun Twarock & Maria Enrica Virgillito, 2020. "A multi-scale model of virus pandemic: Heterogeneous interactive entities in a globally connected world," LEM Papers Series 2020/16, Laboratory of Economics and Management (LEM), Sant'Anna School of Advanced Studies, Pisa, Italy.
  8. Joshua S Weitz & Philip N Benfey & Ned S Wingreen, 2007. "Evolution, Interactions, and Biological Networks," PLOS Biology, Public Library of Science, vol. 5(1), pages 1-3, January.
  9. Robrecht Cannoodt & Joeri Ruyssinck & Jan Ramon & Katleen De Preter & Yvan Saeys, 2018. "IncGraph: Incremental graphlet counting for topology optimisation," PLOS ONE, Public Library of Science, vol. 13(4), pages 1-11, April.
  10. Margaritis Voliotis & Philipp Thomas & Ramon Grima & Clive G Bowsher, 2016. "Stochastic Simulation of Biomolecular Networks in Dynamic Environments," PLOS Computational Biology, Public Library of Science, vol. 12(6), pages 1-18, June.
  11. Qing-Ju Jiao & Yan-Kai Zhang & Lu-Ning Li & Hong-Bin Shen, 2011. "BinTree Seeking: A Novel Approach to Mine Both Bi-Sparse and Cohesive Modules in Protein Interaction Networks," PLOS ONE, Public Library of Science, vol. 6(11), pages 1-12, November.
  12. Daniel Couch & Zhenning Yu & Jin Hyun Nam & Carter Allen & Paula S Ramos & Willian A da Silveira & Kelly J Hunt & Edward S Hazard & Gary Hardiman & Andrew Lawson & Dongjun Chung, 2019. "GAIL: An interactive webserver for inference and dynamic visualization of gene-gene associations based on gene ontology guided mining of biomedical literature," PLOS ONE, Public Library of Science, vol. 14(7), pages 1-19, July.
  13. Manfred Füllsack, 2011. "Firstness - As seen from the perspective of Complexity Research," E-LOGOS, Prague University of Economics and Business, vol. 2011(1), pages 1-19.
  14. Samrat Chatterjee & Dhiraj Kumar, 2011. "Unraveling the Design Principle for Motif Organization in Signaling Networks," PLOS ONE, Public Library of Science, vol. 6(12), pages 1-9, December.
  15. Anupam Saxena & Hod Lipson & Francisco J Valero-Cuevas, 2012. "Functional Inference of Complex Anatomical Tendinous Networks at a Macroscopic Scale via Sparse Experimentation," PLOS Computational Biology, Public Library of Science, vol. 8(11), pages 1-17, November.
  16. Alexander Rivkind & Hallel Schreier & Naama Brenner & Omri Barak, 2020. "Scale free topology as an effective feedback system," PLOS Computational Biology, Public Library of Science, vol. 16(5), pages 1-24, May.
  17. Cui, Xue-Mei & Yoon, Chang No & Youn, Hyejin & Lee, Sang Hoon & Jung, Jean S. & Han, Seung Kee, 2017. "Dynamic burstiness of word-occurrence and network modularity in textbook systems," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 487(C), pages 103-110.
  18. Qian Yu & Rui Tao & Shan Jiang, 2023. "Exploring the evolution of interdisciplinary citation network by the colored network motifs: the case of Perovskite Materials," Scientometrics, Springer;Akadémiai Kiadó, vol. 128(8), pages 4421-4446, August.
  19. Perc, Matjaž, 2010. "Growth and structure of Slovenia’s scientific collaboration network," Journal of Informetrics, Elsevier, vol. 4(4), pages 475-482.
  20. Zheng Hong, 2019. "A novel individualized drug repositioning approach for predicting personalized candidate drugs for type 1 diabetes mellitus," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 18(5), pages 1-9, October.
  21. Krivonosov, Mikhail & Nazarenko, Tatiana & Bacalini, Maria Giulia & Vedunova, Maria & Franceschi, Claudio & Zaikin, Alexey & Ivanchenko, Mikhail, 2022. "Age-related trajectories of DNA methylation network markers: A parenclitic network approach to a family-based cohort of patients with Down Syndrome," Chaos, Solitons & Fractals, Elsevier, vol. 165(P2).
  22. Pilar García-Peñarrubia & Juan J Gálvez & Jesús Gálvez, 2011. "Spatio-Temporal Dependence of the Signaling Response in Immune-Receptor Trafficking Networks Regulated by Cell Density: A Theoretical Model," PLOS ONE, Public Library of Science, vol. 6(7), pages 1-12, July.
  23. Anne Lopes & Sophie Sacquin-Mora & Viktoriya Dimitrova & Elodie Laine & Yann Ponty & Alessandra Carbone, 2013. "Protein-Protein Interactions in a Crowded Environment: An Analysis via Cross-Docking Simulations and Evolutionary Information," PLOS Computational Biology, Public Library of Science, vol. 9(12), pages 1-18, December.
  24. Nikolaos K. Voulgarakis, 2024. "Hierarchical Symmetry-Breaking Model for Stem Cell Differentiation," Mathematics, MDPI, vol. 12(9), pages 1-15, May.
  25. Hütt, M.-Th. & Lüttge, U., 2005. "The interplay of synchronization and fluctuations reveals connectivity levels in networks of nonlinear oscillators," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 350(2), pages 207-226.
  26. Mahdieh Ghasemi & Maseud Rahgozar & Gholamreza Bidkhori & Ali Masoudi-Nejad, 2013. "C-element: A New Clustering Algorithm to Find High Quality Functional Modules in PPI Networks," PLOS ONE, Public Library of Science, vol. 8(9), pages 1-12, September.
  27. Cai Gao & Xin Lan & Xiaoge Zhang & Yong Deng, 2013. "A Bio-Inspired Methodology of Identifying Influential Nodes in Complex Networks," PLOS ONE, Public Library of Science, vol. 8(6), pages 1-11, June.
  28. Simeon D. Castle & Michiel Stock & Thomas E. Gorochowski, 2024. "Engineering is evolution: a perspective on design processes to engineer biology," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
  29. Bo Xu & Hongfei Lin & Yang Chen & Zhihao Yang & Hongfang Liu, 2013. "Protein Complex Identification by Integrating Protein-Protein Interaction Evidence from Multiple Sources," PLOS ONE, Public Library of Science, vol. 8(12), pages 1-12, December.
  30. Tracy Chih-Ting Koubkova-Yu & Jung-Chi Chao & Jun-Yi Leu, 2018. "Heterologous Hsp90 promotes phenotypic diversity through network evolution," PLOS Biology, Public Library of Science, vol. 16(11), pages 1-29, November.
  31. Romualdo Pastor-Satorras & Eric Smith & Ricard V. Solé, 2002. "Evolving Protein Interaction Networks through Gene Duplication," Working Papers 02-02-008, Santa Fe Institute.
  32. Bogna J. Smug & Krzysztof Szczepaniak & Eduardo P. C. Rocha & Stanislaw Dunin-Horkawicz & Rafał J. Mostowy, 2023. "Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
  33. Miguel Fribourg & Diomedes E Logothetis & Javier González-Maeso & Stuart C Sealfon & Belén Galocha-Iragüen & Fernando Las-Heras Andrés & Vladimir Brezina, 2017. "Elucidation of molecular kinetic schemes from macroscopic traces using system identification," PLOS Computational Biology, Public Library of Science, vol. 13(2), pages 1-34, February.
  34. N. Bourgeois & A. Giannakos & G. Lucarelli & I. Milis & V. T. Paschos & O. Pottié, 2012. "The max quasi-independent set problem," Journal of Combinatorial Optimization, Springer, vol. 23(1), pages 94-117, January.
  35. Saharnaz Dilmaghani & Matthias R Brust & Carlos H C Ribeiro & Emmanuel Kieffer & Grégoire Danoy & Pascal Bouvry, 2022. "From communities to protein complexes: A local community detection algorithm on PPI networks," PLOS ONE, Public Library of Science, vol. 17(1), pages 1-17, January.
  36. Zhou, Qing & Benlic, Una & Wu, Qinghua, 2020. "An opposition-based memetic algorithm for the maximum quasi-clique problem," European Journal of Operational Research, Elsevier, vol. 286(1), pages 63-83.
  37. Yongli Li & Chong Wu & Zizheng Wang, 2015. "An information-theoretic approach for detecting communities in networks," Quality & Quantity: International Journal of Methodology, Springer, vol. 49(4), pages 1719-1733, July.
  38. Krishnan, Arun & Tomita, Masaru & Giuliani, Alessandro, 2008. "Evolution of gene regulatory networks: Robustness as an emergent property of evolution," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 387(8), pages 2170-2186.
  39. Zhang, Yuerong & Marshall, Stephen & Manley, Ed, 2021. "Understanding the roles of rail stations: Insights from network approaches in the London metropolitan area," Journal of Transport Geography, Elsevier, vol. 94(C).
  40. Frederic Li Mow Chee & Bruno Beernaert & Billie G. C. Griffith & Alexander E. P. Loftus & Yatendra Kumar & Jimi C. Wills & Martin Lee & Jessica Valli & Ann P. Wheeler & J. Douglas Armstrong & Maddy Pa, 2023. "Mena regulates nesprin-2 to control actin–nuclear lamina associations, trans-nuclear membrane signalling and gene expression," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
  41. Sun, Lanfang & Jiang, Lu & Li, Menghui & He, Dacheng, 2006. "Statistical analysis of gene regulatory networks reconstructed from gene expression data of lung cancer," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 370(2), pages 663-671.
  42. Emre Guney & Baldo Oliva, 2014. "Analysis of the Robustness of Network-Based Disease-Gene Prioritization Methods Reveals Redundancy in the Human Interactome and Functional Diversity of Disease-Genes," PLOS ONE, Public Library of Science, vol. 9(4), pages 1-11, April.
  43. Mark K Transtrum & Peng Qiu, 2016. "Bridging Mechanistic and Phenomenological Models of Complex Biological Systems," PLOS Computational Biology, Public Library of Science, vol. 12(5), pages 1-34, May.
  44. Haijia Shi & Lei Shi, 2014. "Identifying Emerging Motif in Growing Networks," PLOS ONE, Public Library of Science, vol. 9(6), pages 1-12, June.
  45. Elena Kutumova & Ilya Akberdin & Ilya Kiselev & Ruslan Sharipov & Fedor Kolpakov, 2022. "Modular Representation of Physiologically Based Pharmacokinetic Models: Nanoparticle Delivery to Solid Tumors in Mice as an Example," Mathematics, MDPI, vol. 10(7), pages 1-20, April.
  46. Kuo-Ching Ying & Shih-Wei Lin, 2020. "Maximizing cohesion and separation for detecting protein functional modules in protein-protein interaction networks," PLOS ONE, Public Library of Science, vol. 15(10), pages 1-16, October.
  47. Scholtens, Denise & Miron, Alexander & M. Merchant, Faisal & Miller, Arden & L. Miron, Penelope & Dirk Iglehart, J. & Gentleman, Robert, 2004. "Analyzing factorial designed microarray experiments," Journal of Multivariate Analysis, Elsevier, vol. 90(1), pages 19-43, July.
IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.