The Generalized Higher Criticism for Testing SNP-Set Effects in Genetic Association Studies
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DOI: 10.1080/01621459.2016.1192039
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- Armin Schwartzman & Xihong Lin, 2011. "The effect of correlation in false discovery rate estimation," Biometrika, Biometrika Trust, vol. 98(1), pages 199-214.
- Zhang, Yu & Liu, Jun S., 2011. "Fast and Accurate Approximation to Significance Tests in Genome-Wide Association Studies," Journal of the American Statistical Association, American Statistical Association, vol. 106(495), pages 846-857.
- Yu I. Ingster & Alexandre B. Tsybakov & N. Verzelzn, 2010. "Detection Boundary in Sparse Regression," Working Papers 2010-28, Center for Research in Economics and Statistics.
- Ian J. Barnett & Xihong Lin, 2014. "Analytical p-value calculation for the higher criticism test in finite-d problems," Biometrika, Biometrika Trust, vol. 101(4), pages 964-970.
- Teri A. Manolio & Francis S. Collins & Nancy J. Cox & David B. Goldstein & Lucia A. Hindorff & David J. Hunter & Mark I. McCarthy & Erin M. Ramos & Lon R. Cardon & Aravinda Chakravarti & Judy H. Cho &, 2009. "Finding the missing heritability of complex diseases," Nature, Nature, vol. 461(7265), pages 747-753, October.
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Cited by:
- Zihan Zhao & Jianjun Zhang & Qiuying Sha & Han Hao, 2020. "Testing gene-environment interactions for rare and/or common variants in sequencing association studies," PLOS ONE, Public Library of Science, vol. 15(3), pages 1-15, March.
- Zhao, Sihai Dave & Cai, T. Tony & Li, Hongzhe, 2017. "Optimal detection of weak positive latent dependence between two sequences of multiple tests," Journal of Multivariate Analysis, Elsevier, vol. 160(C), pages 169-184.
- Zhang, Hong & Wu, Zheyang, 2022. "The general goodness-of-fit tests for correlated data," Computational Statistics & Data Analysis, Elsevier, vol. 167(C).
- Haque Md Rejuan & Kubatko Laura, 2024. "A global test of hybrid ancestry from genome-scale data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 23(1), pages 1-18, January.
- Hébert, Florian & Causeur, David & Emily, Mathieu, 2021. "An adaptive decorrelation procedure for signal detection," Computational Statistics & Data Analysis, Elsevier, vol. 153(C).
- Hong Zhang & Zheyang Wu, 2023. "The generalized Fisher's combination and accurate p‐value calculation under dependence," Biometrics, The International Biometric Society, vol. 79(2), pages 1159-1172, June.
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