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Metabolic engineering for enhancing microbial biosynthesis of advanced biofuels

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  • Das, Manali
  • Patra, Pradipta
  • Ghosh, Amit

Abstract

Increasing global energy demand and environmental concerns associated with petroleum have raised interest in biofuels for reducing dependency on crude oil and promote carbon-neutral energy generation. Although ethanol is a well-established biofuel, properties like low energy density, hygroscopicity and corrosiveness limit their usage in existing transportation sectors. Need for more energy‐dense fuel similar to conventional oil has motivated research on advanced biofuels like butanol, isobutanol, fatty-acid and isoprenoid-derivatives. These fuels not only have very similar energy content and combustion properties to existing fuels but also their storage and transportation properties are compatible with the current infrastructure. Microbes have the native pathway for the synthesis of these molecules, but natural titer is significantly low for commercialization. Metabolic engineering approaches can help in redirecting the cellular fluxes towards these pathways thus improving the titer for microbial synthesis of advanced biofuels. This review provides a comprehensive outlook on the trends and developments in metabolic engineering strategies for advanced biofuel production using different hosts. Possible strategies include protein engineering, co-factor balancing using rapid genome engineering tools like CRISPR/Cas9, MAGE/eMAGE, RNAi. Additionally, in silico approaches like flux balance analysis and 13C metabolic flux analysis can help in the further improvisation and optimization of designed pathways to maximize carbon-flux towards desired pathways. However, the techno-economic analysis predicts that commercialization of biofuels is highly influenced by feedstock and productivity. Still, several countries have adopted energy mandates to incorporate these fuels in transportation sector for a greener and cost-effective energy supply. An integrated approach involving metabolic engineering and systems biology would help in improving titer of advanced biofuels.

Suggested Citation

  • Das, Manali & Patra, Pradipta & Ghosh, Amit, 2020. "Metabolic engineering for enhancing microbial biosynthesis of advanced biofuels," Renewable and Sustainable Energy Reviews, Elsevier, vol. 119(C).
  • Handle: RePEc:eee:rensus:v:119:y:2020:i:c:s1364032119307701
    DOI: 10.1016/j.rser.2019.109562
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    References listed on IDEAS

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    1. Eric J. Steen & Yisheng Kang & Gregory Bokinsky & Zhihao Hu & Andreas Schirmer & Amy McClure & Stephen B. del Cardayre & Jay D. Keasling, 2010. "Microbial production of fatty-acid-derived fuels and chemicals from plant biomass," Nature, Nature, vol. 463(7280), pages 559-562, January.
    2. Harris H. Wang & Farren J. Isaacs & Peter A. Carr & Zachary Z. Sun & George Xu & Craig R. Forest & George M. Church, 2009. "Programming cells by multiplex genome engineering and accelerated evolution," Nature, Nature, vol. 460(7257), pages 894-898, August.
    3. Yong Jun Choi & Sang Yup Lee, 2013. "Microbial production of short-chain alkanes," Nature, Nature, vol. 502(7472), pages 571-574, October.
    4. Fengxia Dong, 2007. "Food Security and Biofuels Development: The Case of China," Center for Agricultural and Rural Development (CARD) Publications 07-bp52, Center for Agricultural and Rural Development (CARD) at Iowa State University.
    5. Jan Gajewski & Renata Pavlovic & Manuel Fischer & Eckhard Boles & Martin Grininger, 2017. "Engineering fungal de novo fatty acid synthesis for short chain fatty acid production," Nature Communications, Nature, vol. 8(1), pages 1-8, April.
    6. Pamela P. Peralta-Yahya & Fuzhong Zhang & Stephen B. del Cardayre & Jay D. Keasling, 2012. "Microbial engineering for the production of advanced biofuels," Nature, Nature, vol. 488(7411), pages 320-328, August.
    7. Pamela P. Peralta-Yahya & Mario Ouellet & Rossana Chan & Aindrila Mukhopadhyay & Jay D. Keasling & Taek Soon Lee, 2011. "Identification and microbial production of a terpene-based advanced biofuel," Nature Communications, Nature, vol. 2(1), pages 1-8, September.
    8. Sorda, Giovanni & Banse, Martin & Kemfert, Claudia, 2010. "An overview of biofuel policies across the world," Energy Policy, Elsevier, vol. 38(11), pages 6977-6988, November.
    9. Valle-Rodríguez, Juan Octavio & Shi, Shuobo & Siewers, Verena & Nielsen, Jens, 2014. "Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid ethyl esters, an advanced biofuel, by eliminating non-essential fatty acid utilization pathways," Applied Energy, Elsevier, vol. 115(C), pages 226-232.
    10. Carriquiry, Miguel A. & Du, Xiaodong & Timilsina, Govinda R., 2011. "Second generation biofuels: Economics and policies," Energy Policy, Elsevier, vol. 39(7), pages 4222-4234, July.
    11. John Blazeck & Andrew Hill & Leqian Liu & Rebecca Knight & Jarrett Miller & Anny Pan & Peter Otoupal & Hal S. Alper, 2014. "Harnessing Yarrowia lipolytica lipogenesis to create a platform for lipid and biofuel production," Nature Communications, Nature, vol. 5(1), pages 1-10, May.
    12. Jiazhang Lian & Mohammad HamediRad & Sumeng Hu & Huimin Zhao, 2017. "Combinatorial metabolic engineering using an orthogonal tri-functional CRISPR system," Nature Communications, Nature, vol. 8(1), pages 1-9, December.
    13. Yongjin J. Zhou & Nicolaas A. Buijs & Zhiwei Zhu & Jiufu Qin & Verena Siewers & Jens Nielsen, 2016. "Production of fatty acid-derived oleochemicals and biofuels by synthetic yeast cell factories," Nature Communications, Nature, vol. 7(1), pages 1-9, September.
    14. Peng Xu & Qin Gu & Wenya Wang & Lynn Wong & Adam G.W. Bower & Cynthia H. Collins & Mattheos A.G. Koffas, 2013. "Modular optimization of multi-gene pathways for fatty acids production in E. coli," Nature Communications, Nature, vol. 4(1), pages 1-8, June.
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    2. Sabarathinam Shanmugam & Anjana Hari & Arivalagan Pugazhendhi & Timo Kikas, 2023. "Integrated Catalytic Upgrading of Biomass-Derived Alcohols for Advanced Biofuel Production," Energies, MDPI, vol. 16(13), pages 1-24, June.

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