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Genebanking plant genetic resources in the postgenomic era

Author

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  • Sylvain Aubry

    (University of Zurich
    Swiss Federal Office for Agriculture)

Abstract

Genebanking, the process of preserving genetic resources, is a central practice in the modern management of crop genetics, especially for the species used for food and agriculture. Closely interrelated networks of local, national and global actors are responsible for ex situ conservation. They all seek to make plant genetic resources accessible for all and now face new challenges arising from digitisation. Plant sciences are entering the postgenomic era, moving fast from initially providing a single reference genome for each species (genomics), to harnessing the extent of diversity within crop species (pangenomics) and among their relatives (referred to as postgenomics). This paper describes the extent to which ex situ collections have already undergone a digital shift, or are planning to do so, and the potential impact of this postgenomic-induced dematerialisation on the global governance of plant genetic resources. In turn, digitising material (seed) collection changes the relationship between genebanks and genomic databases. Comprehensive genomic characterisation of genebank accessions is ongoing, and I argue here that these efforts may provide a unique opportunity for genebanks to further embrace the moral, ethical and ultimately political principles on which they were built. Repurposing genebanks as decentralised digital biocentres could help relocate capabilities and stewardship over genetic resources. Empowering local farmers by providing access, promoting the use and unlocking benefits from state-of-the-art tools of modern plant breeding may allow bridging the breeding divide. However, to accomplish such a paradigm shift, genebanks require a strong political mandate that must primarily originate from the access and benefit-sharing framework. Only so may the global challenges associated with the loss of biodiversity and food insecurity be addressed.

Suggested Citation

  • Sylvain Aubry, 2023. "Genebanking plant genetic resources in the postgenomic era," Agriculture and Human Values, Springer;The Agriculture, Food, & Human Values Society (AFHVS), vol. 40(3), pages 961-971, September.
  • Handle: RePEc:spr:agrhuv:v:40:y:2023:i:3:d:10.1007_s10460-023-10417-7
    DOI: 10.1007/s10460-023-10417-7
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    1. Eric J.B. von Wettberg & Peter L. Chang & Fatma Başdemir & Noelia Carrasquila-Garcia & Lijalem Balcha Korbu & Susan M. Moenga & Gashaw Bedada & Alex Greenlon & Ken S. Moriuchi & Vasantika Singh & Mati, 2018. "Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation," Nature Communications, Nature, vol. 9(1), pages 1-13, December.
    2. Sean Walkowiak & Liangliang Gao & Cecile Monat & Georg Haberer & Mulualem T. Kassa & Jemima Brinton & Ricardo H. Ramirez-Gonzalez & Markus C. Kolodziej & Emily Delorean & Dinushika Thambugala & Valent, 2020. "Multiple wheat genomes reveal global variation in modern breeding," Nature, Nature, vol. 588(7837), pages 277-283, December.
    3. Louise M. Bezuidenhout & Sabina Leonelli & Ann H. Kelly & Brian Rappert, 2017. "Beyond the digital divide: Towards a situated approach to open data," Science and Public Policy, Oxford University Press, vol. 44(4), pages 464-475.
    4. Zhenchang Liang & Shengchang Duan & Jun Sheng & Shusheng Zhu & Xuemei Ni & Jianhui Shao & Chonghuai Liu & Peter Nick & Fei Du & Peige Fan & Ruzhi Mao & Yifan Zhu & Weiping Deng & Min Yang & Huichuan H, 2019. "Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses," Nature Communications, Nature, vol. 10(1), pages 1-12, December.
    5. Fei Lu & Maria C. Romay & Jeffrey C. Glaubitz & Peter J. Bradbury & Robert J. Elshire & Tianyu Wang & Yu Li & Yongxiang Li & Kassa Semagn & Xuecai Zhang & Alvaro G. Hernandez & Mark A. Mikel & Ilya So, 2015. "High-resolution genetic mapping of maize pan-genome sequence anchors," Nature Communications, Nature, vol. 6(1), pages 1-8, November.
    6. Murukarthick Jayakodi & Sudharsan Padmarasu & Georg Haberer & Venkata Suresh Bonthala & Heidrun Gundlach & Cécile Monat & Thomas Lux & Nadia Kamal & Daniel Lang & Axel Himmelbach & Jennifer Ens & Xiao, 2020. "The barley pan-genome reveals the hidden legacy of mutation breeding," Nature, Nature, vol. 588(7837), pages 284-289, December.
    7. Wensheng Wang & Ramil Mauleon & Zhiqiang Hu & Dmytro Chebotarov & Shuaishuai Tai & Zhichao Wu & Min Li & Tianqing Zheng & Roven Rommel Fuentes & Fan Zhang & Locedie Mansueto & Dario Copetti & Millicen, 2018. "Genomic variation in 3,010 diverse accessions of Asian cultivated rice," Nature, Nature, vol. 557(7703), pages 43-49, May.
    8. Michael W. Bevan & Cristobal Uauy & Brande B. H. Wulff & Ji Zhou & Ksenia Krasileva & Matthew D. Clark, 2017. "Genomic innovation for crop improvement," Nature, Nature, vol. 543(7645), pages 346-354, March.
    9. Ryan Nehring, 2022. "Digitising biopiracy? The global governance of plant genetic resources in the age of digital sequencing information," Third World Quarterly, Taylor & Francis Journals, vol. 43(8), pages 1970-1987, August.
    Full references (including those not matched with items on IDEAS)

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