IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v16y2025i1d10.1038_s41467-025-56931-6.html
   My bibliography  Save this article

Lysosomal NKG7 restrains mTORC1 activity to promote CD8+ T cell durability and tumor control

Author

Listed:
  • Hyoungjun Ham

    (Mayo Clinic
    Mayo Clinic)

  • Jacob B. Hirdler

    (Mayo Clinic)

  • Daniel T. Bihnam

    (Mayo Clinic)

  • Zhiming Mao

    (Mayo Clinic)

  • Joanina K. Gicobi

    (Mayo Clinic)

  • Bruna Gois Macedo

    (Mayo Clinic)

  • Maria F. Rodriguez-Quevedo

    (Mayo Clinic)

  • Destiny F. Schultz

    (Mayo Clinic)

  • Cristina Correia

    (Mayo Clinic)

  • Jun Zhong

    (Mayo Clinic)

  • Kodi E. Martinez

    (Mayo Clinic)

  • Alma Banuelos

    (Mayo Clinic)

  • Dallin S. Ashton

    (Mayo Clinic)

  • Anthony B. Lagnado

    (Mayo Clinic)

  • Ruifeng Guo

    (Mayo Clinic)

  • Rodrigo Pessoa

    (Mayo Clinic)

  • Akhilesh Pandey

    (Mayo Clinic
    Manipal Academy of Higher Education)

  • Hu Li

    (Mayo Clinic)

  • Fabrice Lucien

    (Mayo Clinic)

  • Henrique Borges da Silva

    (Mayo Clinic)

  • Haidong Dong

    (Mayo Clinic
    Mayo Clinic)

  • Daniel D. Billadeau

    (Mayo Clinic
    Mayo Clinic)

Abstract

During infection and cancer, mTORC1-mediated metabolic regulation impacts CD8+ T cell effector expansion and memory development. However, the mechanisms by which CD8+ T cells regulate mTORC1 to support their unique metabolic requirements remain unknown. Here we show that NKG7, a lysosomal protein whose expression is restricted to cytotoxic lymphocytes, negatively regulates mTORC1 recruitment and activation by inhibiting assembly and function of the lysosomal proton pump, vacuolar ATPase (v-ATPase). Human and mouse CD8+ T cells lacking NKG7 show more acidic lysosomes and increased activation of mTORC1 signaling, which could be reversed by inhibition of v-ATPase activity. In mice responding to LCMV infection, NKG7-deleted effector CD8+ T cells are less durable and generate fewer memory precursors, whereas induced expression of NKG7 in CD8+ T cells results in increased presence of intra-tumoral T cells. Overall, our work identifies NKG7 as a CD8+ T cell-specific regulator of mTORC1 activity, required for optimal immune responses.

Suggested Citation

  • Hyoungjun Ham & Jacob B. Hirdler & Daniel T. Bihnam & Zhiming Mao & Joanina K. Gicobi & Bruna Gois Macedo & Maria F. Rodriguez-Quevedo & Destiny F. Schultz & Cristina Correia & Jun Zhong & Kodi E. Mar, 2025. "Lysosomal NKG7 restrains mTORC1 activity to promote CD8+ T cell durability and tumor control," Nature Communications, Nature, vol. 16(1), pages 1-21, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-56931-6
    DOI: 10.1038/s41467-025-56931-6
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-025-56931-6
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-025-56931-6?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Ben Youngblood & J. Scott Hale & Haydn T. Kissick & Eunseon Ahn & Xiaojin Xu & Andreas Wieland & Koichi Araki & Erin E. West & Hazem E. Ghoneim & Yiping Fan & Pranay Dogra & Carl W. Davis & Bogumila T, 2017. "Effector CD8 T cells dedifferentiate into long-lived memory cells," Nature, Nature, vol. 552(7685), pages 404-409, December.
    2. Koichi Araki & Alexandra P. Turner & Virginia Oliva Shaffer & Shivaprakash Gangappa & Susanne A. Keller & Martin F. Bachmann & Christian P. Larsen & Rafi Ahmed, 2009. "mTOR regulates memory CD8 T-cell differentiation," Nature, Nature, vol. 460(7251), pages 108-112, July.
    3. Katherine C. Verbist & Cliff S. Guy & Sandra Milasta & Swantje Liedmann & Marcin M. Kamiński & Ruoning Wang & Douglas R. Green, 2016. "Metabolic maintenance of cell asymmetry following division in activated T lymphocytes," Nature, Nature, vol. 532(7599), pages 389-393, April.
    4. Fresia Pareja & Alissa H. Brandes & Thais Basili & Pier Selenica & Felipe C. Geyer & Dan Fan & Arnaud Da Cruz Paula & Rahul Kumar & David N. Brown & Rodrigo Gularte-Mérida & Barbara Alemar & Rui Bi & , 2018. "Loss-of-function mutations in ATP6AP1 and ATP6AP2 in granular cell tumors," Nature Communications, Nature, vol. 9(1), pages 1-13, December.
    5. Katja Luck & Dae-Kyum Kim & Luke Lambourne & Kerstin Spirohn & Bridget E. Begg & Wenting Bian & Ruth Brignall & Tiziana Cafarelli & Francisco J. Campos-Laborie & Benoit Charloteaux & Dongsic Choi & At, 2020. "A reference map of the human binary protein interactome," Nature, Nature, vol. 580(7803), pages 402-408, April.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Alexandria C. Wells & Kaito A. Hioki & Constance C. Angelou & Adam C. Lynch & Xueting Liang & Daniel J. Ryan & Iris Thesmar & Saule Zhanybekova & Saulius Zuklys & Jacob Ullom & Agnes Cheong & Jesse Ma, 2023. "Let-7 enhances murine anti-tumor CD8 T cell responses by promoting memory and antagonizing terminal differentiation," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    2. Joshua M. Gammon & Sean T. Carey & Vikas Saxena & Haleigh B. Eppler & Shannon J. Tsai & Christina Paluskievicz & Yanbao Xiong & Lushen Li & Marian Ackun-Farmmer & Lisa H. Tostanoski & Emily A. Gosseli, 2023. "Engineering the lymph node environment promotes antigen-specific efficacy in type 1 diabetes and islet transplantation," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
    3. Patrick Bryant & Gabriele Pozzati & Wensi Zhu & Aditi Shenoy & Petras Kundrotas & Arne Elofsson, 2022. "Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    4. Victor Joo & Karim Abdelhamid & Alessandra Noto & Sofiya Latifyan & Federica Martina & Douglas Daoudlarian & Rita De Micheli & Menno Pruijm & Solange Peters & Roger Hullin & Olivier Gaide & Giuseppe P, 2024. "Primary prophylaxis with mTOR inhibitor enhances T cell effector function and prevents heart transplant rejection during talimogene laherparepvec therapy of squamous cell carcinoma," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    5. Leticia Laura Niborski & Paul Gueguen & Mengliang Ye & Allan Thiolat & Rodrigo Nalio Ramos & Pamela Caudana & Jordan Denizeau & Ludovic Colombeau & Raphaël Rodriguez & Christel Goudot & Jean-Michel Lu, 2022. "CD8+T cell responsiveness to anti-PD-1 is epigenetically regulated by Suv39h1 in melanomas," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    6. Nilesh Kumar & M. Shahid Mukhtar, 2024. "Viral Targets in the Human Interactome with Comprehensive Centrality Analysis: SARS-CoV-2, a Case Study," Data, MDPI, vol. 9(8), pages 1-12, August.
    7. Kaifan Bao & Xiaoqun Gu & Yajun Song & Yijing Zhou & Yanyan Chen & Xi Yu & Weiyuan Yuan & Liyun Shi & Jie Zheng & Min Hong, 2024. "TCF-1 and TOX regulate the memory formation of intestinal group 2 innate lymphoid cells in asthma," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
    8. Ghulam Muhiuddin & Sovan Samanta & Abdulrahman F. Aljohani & Abeer M. Alkhaibari, 2023. "A Study on Graph Centrality Measures of Different Diseases Due to DNA Sequencing," Mathematics, MDPI, vol. 11(14), pages 1-18, July.
    9. Shu Shien Chin & Erik Guillen & Laurent Chorro & Sooraj Achar & Karina Ng & Susanne Oberle & Francesca Alfei & Dietmar Zehn & Grégoire Altan-Bonnet & Fabien Delahaye & Grégoire Lauvau, 2022. "T cell receptor and IL-2 signaling strength control memory CD8+ T cell functional fitness via chromatin remodeling," Nature Communications, Nature, vol. 13(1), pages 1-20, December.
    10. Diego Esposito & Jane Dudley-Fraser & Acely Garza-Garcia & Katrin Rittinger, 2022. "Divergent self-association properties of paralogous proteins TRIM2 and TRIM3 regulate their E3 ligase activity," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    11. Joshua S. Woodworth & Vanessa Contreras & Dennis Christensen & Thibaut Naninck & Nidhal Kahlaoui & Anne-Sophie Gallouët & Sébastien Langlois & Emma Burban & Candie Joly & Wesley Gros & Nathalie Dereud, 2024. "MINCLE and TLR9 agonists synergize to induce Th1/Th17 vaccine memory and mucosal recall in mice and non-human primates," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    12. Bingjie Hao & István A. Kovács, 2023. "A positive statistical benchmark to assess network agreement," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    13. Maik Müller & Fabienne Gräbnitz & Niculò Barandun & Yang Shen & Fabian Wendt & Sebastian N. Steiner & Yannik Severin & Stefan U. Vetterli & Milon Mondal & James R. Prudent & Raphael Hofmann & Marc Oos, 2021. "Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks," Nature Communications, Nature, vol. 12(1), pages 1-17, December.
    14. Pisanu Buphamalai & Tomislav Kokotovic & Vanja Nagy & Jörg Menche, 2021. "Network analysis reveals rare disease signatures across multiple levels of biological organization," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
    15. Xu-Wen Wang & Lorenzo Madeddu & Kerstin Spirohn & Leonardo Martini & Adriano Fazzone & Luca Becchetti & Thomas P. Wytock & István A. Kovács & Olivér M. Balogh & Bettina Benczik & Mátyás Pétervári & Be, 2023. "Assessment of community efforts to advance network-based prediction of protein–protein interactions," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    16. Juan Blanco-Heredia & Carla Anjos Souza & Juan L. Trincado & Maria Gonzalez-Cao & Samuel Gonçalves-Ribeiro & Sara Ruiz Gil & Dmytro Pravdyvets & Samandhy Cedeño & Maurizio Callari & Antonio Marra & An, 2024. "Converging and evolving immuno-genomic routes toward immune escape in breast cancer," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    17. Jens S. Andersen & Aaran Vijayakumaran & Christopher Godbehere & Esben Lorentzen & Vito Mennella & Kenneth Bødtker Schou, 2024. "Uncovering structural themes across cilia microtubule inner proteins with implications for human cilia function," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    18. Cheoljun Choi & Yujin L. Jeong & Koung-Min Park & Minji Kim & Sangseob Kim & Honghyun Jo & Sumin Lee & Heeseong Kim & Garam Choi & Yoon Ha Choi & Je Kyung Seong & Sik Namgoong & Yeonseok Chung & Young, 2024. "TM4SF19-mediated control of lysosomal activity in macrophages contributes to obesity-induced inflammation and metabolic dysfunction," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
    19. Xiaofeng Liao & Wenxue Li & Hongyue Zhou & Barani Kumar Rajendran & Ao Li & Jingjing Ren & Yi Luan & David A. Calderwood & Benjamin Turk & Wenwen Tang & Yansheng Liu & Dianqing Wu, 2024. "The CUL5 E3 ligase complex negatively regulates central signaling pathways in CD8+ T cells," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
    20. Yesheng Fu & Lei Li & Xin Zhang & Zhikang Deng & Ying Wu & Wenzhe Chen & Yuchen Liu & Shan He & Jian Wang & Yuping Xie & Zhiwei Tu & Yadi Lyu & Yange Wei & Shujie Wang & Chun-Ping Cui & Cui Hua Liu & , 2024. "Systematic HOIP interactome profiling reveals critical roles of linear ubiquitination in tissue homeostasis," Nature Communications, Nature, vol. 15(1), pages 1-19, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-56931-6. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.