Converging and evolving immuno-genomic routes toward immune escape in breast cancer
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DOI: 10.1038/s41467-024-45292-1
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- Mikhail Shugay & Dmitriy V Bagaev & Maria A Turchaninova & Dmitriy A Bolotin & Olga V Britanova & Ekaterina V Putintseva & Mikhail V Pogorelyy & Vadim I Nazarov & Ivan V Zvyagin & Vitalina I Kirgizova, 2015. "VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires," PLOS Computational Biology, Public Library of Science, vol. 11(11), pages 1-16, November.
- Moritz Gerstung & Clemency Jolly & Ignaty Leshchiner & Stefan C. Dentro & Santiago Gonzalez & Daniel Rosebrock & Thomas J. Mitchell & Yulia Rubanova & Pavana Anur & Kaixian Yu & Maxime Tarabichi & Ami, 2020. "The evolutionary history of 2,658 cancers," Nature, Nature, vol. 578(7793), pages 122-128, February.
- Felipe C. Geyer & Anqi Li & Anastasios D. Papanastasiou & Alison Smith & Pier Selenica & Kathleen A. Burke & Marcia Edelweiss & Huei-Chi Wen & Salvatore Piscuoglio & Anne M. Schultheis & Luciano G. Ma, 2018. "Recurrent hotspot mutations in HRAS Q61 and PI3K-AKT pathway genes as drivers of breast adenomyoepitheliomas," Nature Communications, Nature, vol. 9(1), pages 1-16, December.
- Rachel Rosenthal & Elizabeth Larose Cadieux & Roberto Salgado & Maise Al Bakir & David A. Moore & Crispin T. Hiley & Tom Lund & Miljana Tanić & James L. Reading & Kroopa Joshi & Jake Y. Henry & Ehsan , 2019. "Neoantigen-directed immune escape in lung cancer evolution," Nature, Nature, vol. 567(7749), pages 479-485, March.
- Fresia Pareja & Alissa H. Brandes & Thais Basili & Pier Selenica & Felipe C. Geyer & Dan Fan & Arnaud Da Cruz Paula & Rahul Kumar & David N. Brown & Rodrigo Gularte-Mérida & Barbara Alemar & Rui Bi & , 2018. "Loss-of-function mutations in ATP6AP1 and ATP6AP2 in granular cell tumors," Nature Communications, Nature, vol. 9(1), pages 1-13, December.
- Shelly Kalaora & Joo Sang Lee & Eilon Barnea & Ronen Levy & Polina Greenberg & Michal Alon & Gal Yagel & Gitit Bar Eli & Roni Oren & Aviyah Peri & Sushant Patkar & Lital Bitton & Steven A. Rosenberg &, 2020. "Immunoproteasome expression is associated with better prognosis and response to checkpoint therapies in melanoma," Nature Communications, Nature, vol. 11(1), pages 1-12, December.
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