IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v15y2024i1d10.1038_s41467-024-44885-0.html
   My bibliography  Save this article

The CUL5 E3 ligase complex negatively regulates central signaling pathways in CD8+ T cells

Author

Listed:
  • Xiaofeng Liao

    (Yale University School of Medicine
    Yale University School of Medicine)

  • Wenxue Li

    (Yale University School of Medicine)

  • Hongyue Zhou

    (Yale University School of Medicine
    Yale University School of Medicine)

  • Barani Kumar Rajendran

    (Yale University School of Medicine
    Yale University School of Medicine)

  • Ao Li

    (Yale University School of Medicine)

  • Jingjing Ren

    (Yale University School of Medicine)

  • Yi Luan

    (Yale University School of Medicine
    Yale University School of Medicine)

  • David A. Calderwood

    (Yale University School of Medicine)

  • Benjamin Turk

    (Yale University School of Medicine)

  • Wenwen Tang

    (Yale University School of Medicine
    Yale University School of Medicine)

  • Yansheng Liu

    (Yale University School of Medicine
    Yale University School of Medicine
    Yale University School of Medicine)

  • Dianqing Wu

    (Yale University School of Medicine
    Yale University School of Medicine
    Yale University School of Medicine)

Abstract

CD8+ T cells play an important role in anti-tumor immunity. Better understanding of their regulation could advance cancer immunotherapies. Here we identify, via stepwise CRISPR-based screening, that CUL5 is a negative regulator of the core signaling pathways of CD8+ T cells. Knocking out CUL5 in mouse CD8+ T cells significantly improves their tumor growth inhibiting ability, with significant proteomic alterations that broadly enhance TCR and cytokine signaling and their effector functions. Chemical inhibition of neddylation required by CUL5 activation, also enhances CD8 effector activities with CUL5 validated as a major target. Mechanistically, CUL5, which is upregulated by TCR stimulation, interacts with the SOCS-box-containing protein PCMTD2 and inhibits TCR and IL2 signaling. Additionally, CTLA4 is markedly upregulated by CUL5 knockout, and its inactivation further enhances the anti-tumor effect of CUL5 KO. These results together reveal a negative regulatory mechanism for CD8+ T cells and have strong translational implications in cancer immunotherapy.

Suggested Citation

  • Xiaofeng Liao & Wenxue Li & Hongyue Zhou & Barani Kumar Rajendran & Ao Li & Jingjing Ren & Yi Luan & David A. Calderwood & Benjamin Turk & Wenwen Tang & Yansheng Liu & Dianqing Wu, 2024. "The CUL5 E3 ligase complex negatively regulates central signaling pathways in CD8+ T cells," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-44885-0
    DOI: 10.1038/s41467-024-44885-0
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-024-44885-0
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-024-44885-0?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Rachel C. Lynn & Evan W. Weber & Elena Sotillo & David Gennert & Peng Xu & Zinaida Good & Hima Anbunathan & John Lattin & Robert Jones & Victor Tieu & Surya Nagaraja & Jeffrey Granja & Charles F. A. B, 2019. "c-Jun overexpression in CAR T cells induces exhaustion resistance," Nature, Nature, vol. 576(7786), pages 293-300, December.
    2. Ines Malenica & Julien Adam & Stéphanie Corgnac & Laura Mezquita & Edouard Auclin & Isabelle Damei & Laetitia Grynszpan & Gwendoline Gros & Vincent Montpréville & David Planchard & Nathalie Théret & B, 2021. "Integrin-αV-mediated activation of TGF-β regulates anti-tumour CD8 T cell immunity and response to PD-1 blockade," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
    3. Binod Kumar & Natania S. Field & Dale D. Kim & Asif A. Dar & Yanqun Chen & Aishwarya Suresh & Christopher F. Pastore & Li-Yin Hung & Nadia Porter & Keisuke Sawada & Palak Shah & Omar Elbulok & Emily K, 2022. "The ubiquitin ligase Cul5 regulates CD4+ T cell fate choice and allergic inflammation," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    4. Massimo Andreatta & Jesus Corria-Osorio & Sören Müller & Rafael Cubas & George Coukos & Santiago J. Carmona, 2021. "Interpretation of T cell states from single-cell transcriptomics data using reference atlases," Nature Communications, Nature, vol. 12(1), pages 1-19, December.
    5. Jun Wei & Lingyun Long & Wenting Zheng & Yogesh Dhungana & Seon Ah Lim & Cliff Guy & Yanyan Wang & Yong-Dong Wang & Chenxi Qian & Beisi Xu & Anil KC & Jordy Saravia & Hongling Huang & Jiyang Yu & John, 2019. "Targeting REGNASE-1 programs long-lived effector T cells for cancer therapy," Nature, Nature, vol. 576(7787), pages 471-476, December.
    6. Mateusz Legut & Zoran Gajic & Maria Guarino & Zharko Daniloski & Jahan A. Rahman & Xinhe Xue & Congyi Lu & Lu Lu & Eleni P. Mimitou & Stephanie Hao & Teresa Davoli & Catherine Diefenbach & Peter Smibe, 2022. "A genome-scale screen for synthetic drivers of T cell proliferation," Nature, Nature, vol. 603(7902), pages 728-735, March.
    7. Ben Youngblood & J. Scott Hale & Haydn T. Kissick & Eunseon Ahn & Xiaojin Xu & Andreas Wieland & Koichi Araki & Erin E. West & Hazem E. Ghoneim & Yiping Fan & Pranay Dogra & Carl W. Davis & Bogumila T, 2017. "Effector CD8 T cells dedifferentiate into long-lived memory cells," Nature, Nature, vol. 552(7685), pages 404-409, December.
    8. Joyce Chen & Isaac F. López-Moyado & Hyungseok Seo & Chan-Wang J. Lio & Laura J. Hempleman & Takashi Sekiya & Akihiko Yoshimura & James P. Scott-Browne & Anjana Rao, 2019. "NR4A transcription factors limit CAR T cell function in solid tumours," Nature, Nature, vol. 567(7749), pages 530-534, March.
    9. Paul C. Tumeh & Christina L. Harview & Jennifer H. Yearley & I. Peter Shintaku & Emma J. M. Taylor & Lidia Robert & Bartosz Chmielowski & Marko Spasic & Gina Henry & Voicu Ciobanu & Alisha N. West & M, 2014. "PD-1 blockade induces responses by inhibiting adaptive immune resistance," Nature, Nature, vol. 515(7528), pages 568-571, November.
    10. Ben C. Collins & Christie L. Hunter & Yansheng Liu & Birgit Schilling & George Rosenberger & Samuel L. Bader & Daniel W. Chan & Bradford W. Gibson & Anne-Claude Gingras & Jason M. Held & Mio Hirayama-, 2017. "Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry," Nature Communications, Nature, vol. 8(1), pages 1-12, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Siqi Li & Kun Li & Kang Wang & Haoyuan Yu & Xiangyang Wang & Mengchen Shi & Zhixing Liang & Zhou Yang & Yongwei Hu & Yang Li & Wei Liu & Hua Li & Shuqun Cheng & Linsen Ye & Yang Yang, 2023. "Low-dose radiotherapy combined with dual PD-L1 and VEGFA blockade elicits antitumor response in hepatocellular carcinoma mediated by activated intratumoral CD8+ exhausted-like T cells," Nature Communications, Nature, vol. 14(1), pages 1-21, December.
    2. Marcel P. Trefny & Nicole Kirchhammer & Priska Auf der Maur & Marina Natoli & Dominic Schmid & Markus Germann & Laura Fernandez Rodriguez & Petra Herzig & Jonas Lötscher & Maryam Akrami & Jane C. Stin, 2023. "Deletion of SNX9 alleviates CD8 T cell exhaustion for effective cellular cancer immunotherapy," Nature Communications, Nature, vol. 14(1), pages 1-21, December.
    3. Haibo Zhang & Keke Xue & Wen Li & Xinyi Yang & Yusen Gou & Xiao Su & Feng Qian & Lei Sun, 2024. "Cullin5 drives experimental asthma exacerbations by modulating alveolar macrophage antiviral immunity," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
    4. Lei Xia & Anastasia Komissarova & Arielle Jacover & Yehuda Shovman & Sebastian Arcila-Barrera & Sharona Tornovsky-Babeay & Milsee Mol Jaya Prakashan & Abdelmajeed Nasereddin & Inbar Plaschkes & Yuval , 2023. "Systematic identification of gene combinations to target in innate immune cells to enhance T cell activation," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
    5. Alina C. Teuscher & Cyril Statzer & Anita Goyala & Seraina A. Domenig & Ingmar Schoen & Max Hess & Alexander M. Hofer & Andrea Fossati & Viola Vogel & Orcun Goksel & Ruedi Aebersold & Collin Y. Ewald, 2024. "Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
    6. Raymond Hall Yip Louie & Curtis Cai & Jerome Samir & Mandeep Singh & Ira W. Deveson & James M. Ferguson & Timothy G. Amos & Helen Marie McGuire & Kavitha Gowrishankar & Thiruni Adikari & Robert Balder, 2023. "CAR+ and CAR− T cells share a differentiation trajectory into an NK-like subset after CD19 CAR T cell infusion in patients with B cell malignancies," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
    7. Hao Wu & Xiufeng Zhao & Sophia M. Hochrein & Miriam Eckstein & Gabriela F. Gubert & Konrad Knöpper & Ana Maria Mansilla & Arman Öner & Remi Doucet-Ladevèze & Werner Schmitz & Bart Ghesquière & Sebasti, 2023. "Mitochondrial dysfunction promotes the transition of precursor to terminally exhausted T cells through HIF-1α-mediated glycolytic reprogramming," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
    8. Elaine Lai-Han Leung & Run-Ze Li & Xing-Xing Fan & Lily Yan Wang & Yan Wang & Zebo Jiang & Jumin Huang & Hu-Dan Pan & Yue Fan & Hongmei Xu & Feng Wang & Haopeng Rui & Piu Wong & Hermi Sumatoh & Michae, 2023. "Longitudinal high-dimensional analysis identifies immune features associating with response to anti-PD-1 immunotherapy," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
    9. Rana Falahat & Anders Berglund & Patricio Perez-Villarroel & Ryan M. Putney & Imene Hamaidi & Sungjune Kim & Shari Pilon-Thomas & Glen N. Barber & James J. Mulé, 2023. "Epigenetic state determines the in vivo efficacy of STING agonist therapy," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    10. Yi Liu & Brian Debo & Mingfeng Li & Zhennan Shi & Wanqiang Sheng & Yang Shi, 2021. "LSD1 inhibition sustains T cell invigoration with a durable response to PD-1 blockade," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
    11. Carmen Oi Ning Leung & Yang Yang & Rainbow Wing Hei Leung & Karl Kam Hei So & Hai Jun Guo & Martina Mang Leng Lei & Gregory Kenneth Muliawan & Yuan Gao & Qian Qian Yu & Jing Ping Yun & Stephanie Ma & , 2023. "Broad-spectrum kinome profiling identifies CDK6 upregulation as a driver of lenvatinib resistance in hepatocellular carcinoma," Nature Communications, Nature, vol. 14(1), pages 1-20, December.
    12. Leticia Laura Niborski & Paul Gueguen & Mengliang Ye & Allan Thiolat & Rodrigo Nalio Ramos & Pamela Caudana & Jordan Denizeau & Ludovic Colombeau & Raphaël Rodriguez & Christel Goudot & Jean-Michel Lu, 2022. "CD8+T cell responsiveness to anti-PD-1 is epigenetically regulated by Suv39h1 in melanomas," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    13. Tian-mei Zeng & Guang Yang & Cheng Lou & Wei Wei & Chen-jie Tao & Xi-yun Chen & Qin Han & Zhuo Cheng & Pei-pei Shang & Yu-long Dong & He-ming Xu & Lie-ping Guo & Dong-sheng Chen & Yun-jie Song & Chuan, 2023. "Clinical and biomarker analyses of sintilimab plus gemcitabine and cisplatin as first-line treatment for patients with advanced biliary tract cancer," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    14. Massimo Andreatta & Léonard Hérault & Paul Gueguen & David Gfeller & Ariel J. Berenstein & Santiago J. Carmona, 2024. "Semi-supervised integration of single-cell transcriptomics data," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    15. Brian A. Hodge & Geoffrey T. Meyerhof & Subhash D. Katewa & Ting Lian & Charles Lau & Sudipta Bar & Nicole Y. Leung & Menglin Li & David Li-Kroeger & Simon Melov & Birgit Schilling & Craig Montell & P, 2022. "Dietary restriction and the transcription factor clock delay eye aging to extend lifespan in Drosophila Melanogaster," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    16. Kwasi Adu-Berchie & Joshua M. Brockman & Yutong Liu & Tania W. To & David K. Y. Zhang & Alexander J. Najibi & Yoav Binenbaum & Alexander Stafford & Nikolaos Dimitrakakis & Miguel C. Sobral & Maxence O, 2023. "Adoptive T cell transfer and host antigen-presenting cell recruitment with cryogel scaffolds promotes long-term protection against solid tumors," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    17. Bogang Wu & Xiaowen Zhang & Huai-Chin Chiang & Haihui Pan & Bin Yuan & Payal Mitra & Leilei Qi & Hayk Simonyan & Colin N. Young & Eric Yvon & Yanfen Hu & Nu Zhang & Rong Li, 2022. "RNA polymerase II pausing factor NELF in CD8+ T cells promotes antitumor immunity," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    18. Matthew A. Cottam & Heather L. Caslin & Nathan C. Winn & Alyssa H. Hasty, 2022. "Multiomics reveals persistence of obesity-associated immune cell phenotypes in adipose tissue during weight loss and weight regain in mice," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    19. Yi Yang & Guoquan Yan & Siyuan Kong & Mengxi Wu & Pengyuan Yang & Weiqian Cao & Liang Qiao, 2021. "GproDIA enables data-independent acquisition glycoproteomics with comprehensive statistical control," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
    20. Markus Haake & Beatrice Haack & Tina Schäfer & Patrick N. Harter & Greta Mattavelli & Patrick Eiring & Neha Vashist & Florian Wedekink & Sabrina Genssler & Birgitt Fischer & Julia Dahlhoff & Fatemeh M, 2023. "Tumor-derived GDF-15 blocks LFA-1 dependent T cell recruitment and suppresses responses to anti-PD-1 treatment," Nature Communications, Nature, vol. 14(1), pages 1-19, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-44885-0. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.