Modeling the effect of changing selective pressures on polymorphism and divergence
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DOI: 10.1016/j.tpb.2012.10.001
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- Cathy Haag-Liautard & Mark Dorris & Xulio Maside & Steven Macaskill & Daniel L. Halligan & Brian Charlesworth & Peter D. Keightley, 2007. "Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila," Nature, Nature, vol. 445(7123), pages 82-85, January.
- Carlos D. Bustamante & Rasmus Nielsen & Stanley A. Sawyer & Kenneth M. Olsen & Michael D. Purugganan & Daniel L. Hartl, 2002. "The cost of inbreeding in Arabidopsis," Nature, Nature, vol. 416(6880), pages 531-534, April.
- Justin C. Fay & Gerald J. Wyckoff & Chung-I Wu, 2002. "Testing the neutral theory of molecular evolution with genomic data from Drosophila," Nature, Nature, vol. 415(6875), pages 1024-1026, February.
- Nick G. C. Smith & Adam Eyre-Walker, 2002. "Adaptive protein evolution in Drosophila," Nature, Nature, vol. 415(6875), pages 1022-1024, February.
- Pleuni S Pennings & Joachim Hermisson, 2006. "Soft Sweeps III: The Signature of Positive Selection from Recurrent Mutation," PLOS Genetics, Public Library of Science, vol. 2(12), pages 1-15, December.
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Keywords
McDonald–Kreitman test; MKprf; Drosophila; Selection; Polymorphism; Divergence;All these keywords.
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