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A core gut microbiome in obese and lean twins

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Cited by:

  1. Li, Jie & Shen, Xuzhu & Li, YaoTang, 2021. "Modeling the temporal dynamics of gut microbiota from a local community perspective," Ecological Modelling, Elsevier, vol. 460(C).
  2. Xingqing Zhao & Jian Huang & Xuyan Zhu & Jinchun Chai & Xiaoli Ji, 2020. "Ecological Effects of Heavy Metal Pollution on Soil Microbial Community Structure and Diversity on Both Sides of a River around a Mining Area," IJERPH, MDPI, vol. 17(16), pages 1-18, August.
  3. Andrea Fontana & Concetta Panebianco & Andrea Picchianti-Diamanti & Bruno Laganà & Duccio Cavalieri & Adele Potenza & Riccardo Pracella & Elena Binda & Massimiliano Copetti & Valerio Pazienza, 2019. "Gut Microbiota Profiles Differ among Individuals Depending on Their Region of Origin: An Italian Pilot Study," IJERPH, MDPI, vol. 16(21), pages 1-20, October.
  4. Wei Chen & Clarence K Zhang & Yongmei Cheng & Shaowu Zhang & Hongyu Zhao, 2013. "A Comparison of Methods for Clustering 16S rRNA Sequences into OTUs," PLOS ONE, Public Library of Science, vol. 8(8), pages 1-10, August.
  5. C. E. Dubé & M. Ziegler & A. Mercière & E. Boissin & S. Planes & C. A. -F. Bourmaud & C. R. Voolstra, 2021. "Naturally occurring fire coral clones demonstrate a genetic and environmental basis of microbiome composition," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
  6. Koji Hosomi & Mayu Saito & Jonguk Park & Haruka Murakami & Naoko Shibata & Masahiro Ando & Takahiro Nagatake & Kana Konishi & Harumi Ohno & Kumpei Tanisawa & Attayeb Mohsen & Yi-An Chen & Hitoshi Kawa, 2022. "Oral administration of Blautia wexlerae ameliorates obesity and type 2 diabetes via metabolic remodeling of the gut microbiota," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
  7. Chihiro Morita & Hirokazu Tsuji & Tomokazu Hata & Motoharu Gondo & Shu Takakura & Keisuke Kawai & Kazufumi Yoshihara & Kiyohito Ogata & Koji Nomoto & Kouji Miyazaki & Nobuyuki Sudo, 2015. "Gut Dysbiosis in Patients with Anorexia Nervosa," PLOS ONE, Public Library of Science, vol. 10(12), pages 1-13, December.
  8. Marina Sanchez & Shirin Panahi & Angelo Tremblay, 2014. "Childhood Obesity: A Role for Gut Microbiota?," IJERPH, MDPI, vol. 12(1), pages 1-14, December.
  9. Dongyang Yang & Wei Xu, 2023. "Estimation of Mediation Effect on Zero-Inflated Microbiome Mediators," Mathematics, MDPI, vol. 11(13), pages 1-16, June.
  10. Huang Lin & Merete Eggesbø & Shyamal Das Peddada, 2022. "Linear and nonlinear correlation estimators unveil undescribed taxa interactions in microbiome data," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
  11. Patrick D Schloss, 2009. "A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies," PLOS ONE, Public Library of Science, vol. 4(12), pages 1-9, December.
  12. Mariana F. Fernández & Iris Reina-Pérez & Juan Manuel Astorga & Andrea Rodríguez-Carrillo & Julio Plaza-Díaz & Luis Fontana, 2018. "Breast Cancer and Its Relationship with the Microbiota," IJERPH, MDPI, vol. 15(8), pages 1-20, August.
  13. John Molloy & Katrina Allen & Fiona Collier & Mimi L. K. Tang & Alister C. Ward & Peter Vuillermin, 2013. "The Potential Link between Gut Microbiota and IgE-Mediated Food Allergy in Early Life," IJERPH, MDPI, vol. 10(12), pages 1-22, December.
  14. Toby Kenney & Hong Gu & Tianshu Huang, 2021. "Poisson PCA: Poisson measurement error corrected PCA, with application to microbiome data," Biometrics, The International Biometric Society, vol. 77(4), pages 1369-1384, December.
  15. Alessandra N. Bazzano & Kaitlin S. Potts & Lydia A. Bazzano & John B. Mason, 2017. "The Life Course Implications of Ready to Use Therapeutic Food for Children in Low-Income Countries," IJERPH, MDPI, vol. 14(4), pages 1-19, April.
  16. Bharati Patel & Kadamb Patel & Shabbir Moochhala, 2020. "Diet-Derived Post-Biotic Metabolites to Promote Microbiota Function and Human Health," Biomedical Journal of Scientific & Technical Research, Biomedical Research Network+, LLC, vol. 28(2), pages 21520-21524, June.
  17. Thomas J Sharpton & Samantha J Riesenfeld & Steven W Kembel & Joshua Ladau & James P O'Dwyer & Jessica L Green & Jonathan A Eisen & Katherine S Pollard, 2011. "PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data," PLOS Computational Biology, Public Library of Science, vol. 7(1), pages 1-13, January.
  18. Xinhui Wang & Marinus J C Eijkemans & Jacco Wallinga & Giske Biesbroek & Krzysztof Trzciński & Elisabeth A M Sanders & Debby Bogaert, 2012. "Multivariate Approach for Studying Interactions between Environmental Variables and Microbial Communities," PLOS ONE, Public Library of Science, vol. 7(11), pages 1-7, November.
  19. Alba Ordoñez-Rodriguez & Pablo Roman & Lola Rueda-Ruzafa & Ana Campos-Rios & Diana Cardona, 2023. "Changes in Gut Microbiota and Multiple Sclerosis: A Systematic Review," IJERPH, MDPI, vol. 20(5), pages 1-16, March.
  20. Mark Reppell & John Novembre, 2018. "Using pseudoalignment and base quality to accurately quantify microbial community composition," PLOS Computational Biology, Public Library of Science, vol. 14(4), pages 1-23, April.
  21. Lena Takayasu & Wataru Suda & Eiichiro Watanabe & Shinji Fukuda & Kageyasu Takanashi & Hiroshi Ohno & Misako Takayasu & Hideki Takayasu & Masahira Hattori, 2017. "A 3-dimensional mathematical model of microbial proliferation that generates the characteristic cumulative relative abundance distributions in gut microbiomes," PLOS ONE, Public Library of Science, vol. 12(8), pages 1-20, August.
  22. Sanjeena Subedi & Drew Neish & Stephen Bak & Zeny Feng, 2020. "Cluster analysis of microbiome data by using mixtures of Dirichlet–multinomial regression models," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 69(5), pages 1163-1187, November.
  23. Gertrude Ecklu-Mensah & Candice Choo-Kang & Maria Gjerstad Maseng & Sonya Donato & Pascal Bovet & Bharathi Viswanathan & Kweku Bedu-Addo & Jacob Plange-Rhule & Prince Oti Boateng & Terrence E. Forrest, 2023. "Gut microbiota and fecal short chain fatty acids differ with adiposity and country of origin: the METS-microbiome study," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
  24. Lai Jiang & Kathryn L Penney & Edward Giovannucci & Peter Kraft & Kathryn M Wilson, 2018. "A genome-wide association study of energy intake and expenditure," PLOS ONE, Public Library of Science, vol. 13(8), pages 1-18, August.
  25. Małgorzata Moszak & Monika Szulińska & Marta Walczak-Gałęzewska & Paweł Bogdański, 2021. "Nutritional Approach Targeting Gut Microbiota in NAFLD—To Date," IJERPH, MDPI, vol. 18(4), pages 1-32, February.
  26. Claudia Sala & Enrico Giampieri & Silvia Vitali & Paolo Garagnani & Daniel Remondini & Armando Bazzani & Claudio Franceschi & Gastone C Castellani, 2020. "Gut microbiota ecology: Biodiversity estimated from hybrid neutral-niche model increases with health status and aging," PLOS ONE, Public Library of Science, vol. 15(10), pages 1-23, October.
  27. Ahmed A Metwally & Philip S Yu & Derek Reiman & Yang Dai & Patricia W Finn & David L Perkins, 2019. "Utilizing longitudinal microbiome taxonomic profiles to predict food allergy via Long Short-Term Memory networks," PLOS Computational Biology, Public Library of Science, vol. 15(2), pages 1-16, February.
  28. Wodan Ling & Jiuyao Lu & Ni Zhao & Anju Lulla & Anna M. Plantinga & Weijia Fu & Angela Zhang & Hongjiao Liu & Hoseung Song & Zhigang Li & Jun Chen & Timothy W. Randolph & Wei Li A. Koay & James R. Whi, 2022. "Batch effects removal for microbiome data via conditional quantile regression," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
  29. Li, Huimin & Wang, Jinru, 2024. "Sparse basis covariance matrix estimation for high dimensional compositional data via hard thresholding," Statistics & Probability Letters, Elsevier, vol. 209(C).
  30. Daniela Langfeldt & Sven C Neulinger & Wieland Heuer & Ingmar Staufenbiel & Sven Künzel & John F Baines & Jörg Eberhard & Ruth A Schmitz, 2014. "Composition of Microbial Oral Biofilms during Maturation in Young Healthy Adults," PLOS ONE, Public Library of Science, vol. 9(2), pages 1-8, February.
  31. Sean M Gibbons & Claire Duvallet & Eric J Alm, 2018. "Correcting for batch effects in case-control microbiome studies," PLOS Computational Biology, Public Library of Science, vol. 14(4), pages 1-17, April.
  32. Liat Shenhav & Ori Furman & Leah Briscoe & Mike Thompson & Justin D Silverman & Itzhak Mizrahi & Eran Halperin, 2019. "Modeling the temporal dynamics of the gut microbial community in adults and infants," PLOS Computational Biology, Public Library of Science, vol. 15(6), pages 1-21, June.
  33. Doris Vandeputte & Lindsey Commer & Raul Y. Tito & Gunter Kathagen & João Sabino & Séverine Vermeire & Karoline Faust & Jeroen Raes, 2021. "Temporal variability in quantitative human gut microbiome profiles and implications for clinical research," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
  34. Aisling J. Daly & Jan M. Baetens & Bernard De Baets, 2018. "Ecological Diversity: Measuring the Unmeasurable," Mathematics, MDPI, vol. 6(7), pages 1-28, July.
  35. Silvia Rodrigues Jardim & Lucila Marieta Perrotta de Souza & Heitor Siffert Pereira de Souza, 2023. "The Rise of Gastrointestinal Cancers as a Global Phenomenon: Unhealthy Behavior or Progress?," IJERPH, MDPI, vol. 20(4), pages 1-23, February.
  36. Jeffrey D Galley & Michael Bailey & Claire Kamp Dush & Sarah Schoppe-Sullivan & Lisa M Christian, 2014. "Maternal Obesity Is Associated with Alterations in the Gut Microbiome in Toddlers," PLOS ONE, Public Library of Science, vol. 9(11), pages 1-13, November.
  37. Shinji Fukuda & Yumiko Nakanishi & Eisuke Chikayama & Hiroshi Ohno & Tsuneo Hino & Jun Kikuchi, 2009. "Evaluation and Characterization of Bacterial Metabolic Dynamics with a Novel Profiling Technique, Real-Time Metabolotyping," PLOS ONE, Public Library of Science, vol. 4(3), pages 1-10, March.
  38. Fiona B. Tamburini & Dylan Maghini & Ovokeraye H. Oduaran & Ryan Brewster & Michaella R. Hulley & Venesa Sahibdeen & Shane A. Norris & Stephen Tollman & Kathleen Kahn & Ryan G. Wagner & Alisha N. Wade, 2022. "Short- and long-read metagenomics of urban and rural South African gut microbiomes reveal a transitional composition and undescribed taxa," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
  39. Kai Markus Schneider & Antje Mohs & Wenfang Gui & Eric J. C. Galvez & Lena Susanna Candels & Lisa Hoenicke & Uthayakumar Muthukumarasamy & Christian H. Holland & Carsten Elfers & Konrad Kilic & Caroli, 2022. "Imbalanced gut microbiota fuels hepatocellular carcinoma development by shaping the hepatic inflammatory microenvironment," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
  40. Xiao-Tao Jiang & Hai Zhang & Hua-Fang Sheng & Yu Wang & Yan He & Fei Zou & Hong-Wei Zhou, 2012. "Two-Stage Clustering (TSC): A Pipeline for Selecting Operational Taxonomic Units for the High-Throughput Sequencing of PCR Amplicons," PLOS ONE, Public Library of Science, vol. 7(1), pages 1-8, January.
  41. Pirjo Wacklin & Harri Mäkivuokko & Noora Alakulppi & Janne Nikkilä & Heli Tenkanen & Jarkko Räbinä & Jukka Partanen & Kari Aranko & Jaana Mättö, 2011. "Secretor Genotype (FUT2 gene) Is Strongly Associated with the Composition of Bifidobacteria in the Human Intestine," PLOS ONE, Public Library of Science, vol. 6(5), pages 1-10, May.
  42. Liangwu Qiu & Fuhong Gong & Jiang Wu & Dingyun You & Yinzhou Zhao & Lianwu Xu & Xue Cao & Fukai Bao, 2022. "Exercise Interventions Improved Sleep Quality through Regulating Intestinal Microbiota Composition," IJERPH, MDPI, vol. 19(19), pages 1-14, September.
  43. Yunxi Liu & R. A. Leo Elworth & Michael D. Jochum & Kjersti M. Aagaard & Todd J. Treangen, 2022. "De novo identification of microbial contaminants in low microbial biomass microbiomes with Squeegee," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
  44. Hannah Lees & Jonathan Swann & Simon M Poucher & Jeremy K Nicholson & Elaine Holmes & Ian D Wilson & Julian R Marchesi, 2014. "Age and Microenvironment Outweigh Genetic Influence on the Zucker Rat Microbiome," PLOS ONE, Public Library of Science, vol. 9(9), pages 1-11, September.
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