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Lethality and centrality in protein networks

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  1. Gong, Pulin & van Leeuwen, Cees, 2003. "Emergence of scale-free network with chaotic units," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 321(3), pages 679-688.
  2. Piaopiao Chen & Agnès H. Michel & Jianzhi Zhang, 2022. "Transposon insertional mutagenesis of diverse yeast strains suggests coordinated gene essentiality polymorphisms," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
  3. Ruskin, Heather J. & Burns, John, 2006. "Weighted networks in immune system shape space," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 365(2), pages 549-555.
  4. Serra, Roberto & Villani, Marco & Agostini, Luca, 2004. "On the dynamics of random Boolean networks with scale-free outgoing connections," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 339(3), pages 665-673.
  5. Demetrius, Lloyd & Manke, Thomas, 2005. "Robustness and network evolution—an entropic principle," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 346(3), pages 682-696.
  6. Cajueiro, Daniel O., 2010. "Optimal navigation for characterizing the role of the nodes in complex networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 389(9), pages 1945-1954.
  7. Xu, Chunsui & Liu, Zengrong & Wang, Ruiqi, 2010. "How divergence mechanisms influence disassortative mixing property in biology," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 389(3), pages 643-650.
  8. Tom C Freeman & Leon Goldovsky & Markus Brosch & Stijn van Dongen & Pierre Mazière & Russell J Grocock & Shiri Freilich & Janet Thornton & Anton J Enright, 2007. "Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data," PLOS Computational Biology, Public Library of Science, vol. 3(10), pages 1-11, October.
  9. Marcus Engsig & Alejandro Tejedor & Yamir Moreno & Efi Foufoula-Georgiou & Chaouki Kasmi, 2024. "DomiRank Centrality reveals structural fragility of complex networks via node dominance," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
  10. Sergey Vakulenko & Dmitry Grigoriev, 2021. "Deep Gene Networks and Response to Stress," Mathematics, MDPI, vol. 9(23), pages 1-19, November.
  11. Kim, Jongkwang & Wilhelm, Thomas, 2008. "What is a complex graph?," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 387(11), pages 2637-2652.
  12. Jordán, Ferenc, 2022. "The network perspective: Vertical connections linking organizational levels," Ecological Modelling, Elsevier, vol. 473(C).
  13. Mustafa C. Camur & Thomas Sharkey & Chrysafis Vogiatzis, 2022. "The Star Degree Centrality Problem: A Decomposition Approach," INFORMS Journal on Computing, INFORMS, vol. 34(1), pages 93-112, January.
  14. Won Jun Lee & Sang Cheol Kim & Jung-Ho Yoon & Sang Jun Yoon & Johan Lim & You-Sun Kim & Sung Won Kwon & Jeong Hill Park, 2016. "Meta-Analysis of Tumor Stem-Like Breast Cancer Cells Using Gene Set and Network Analysis," PLOS ONE, Public Library of Science, vol. 11(2), pages 1-20, February.
  15. P.B., Divya & Lekha, Divya Sindhu & Johnson, T.P. & Balakrishnan, Kannan, 2022. "Vulnerability of link-weighted complex networks in central attacks and fallback strategy," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 590(C).
  16. Yubo Peng & Bofeng Zhang & Furong Chang, 2021. "Overlapping Community Detection of Bipartite Networks Based on a Novel Community Density," Future Internet, MDPI, vol. 13(4), pages 1-21, March.
  17. Fabio Caccioli & J. Doyne Farmer & Nick Foti & Daniel Rockmore, 2013. "How interbank lending amplifies overlapping portfolio contagion: A case study of the Austrian banking network," Papers 1306.3704, arXiv.org.
  18. Cemal Cagatay Bilgin & Shayoni Ray & Banu Baydil & William P Daley & Melinda Larsen & Bülent Yener, 2012. "Multiscale Feature Analysis of Salivary Gland Branching Morphogenesis," PLOS ONE, Public Library of Science, vol. 7(3), pages 1-19, March.
  19. Dan Braha & Yaneer Bar-Yam, 2004. "Information Flow Structure in Large-Scale Product Development Organizational Networks," Industrial Organization 0407012, University Library of Munich, Germany.
  20. Peter Langfelder & Paul S Mischel & Steve Horvath, 2013. "When Is Hub Gene Selection Better than Standard Meta-Analysis?," PLOS ONE, Public Library of Science, vol. 8(4), pages 1-16, April.
  21. Nadadoor Venkat R. & Ben-Zvi Amos & Shah Sirish L., 2011. "Inferring Gene Networks using Robust Statistical Techniques," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 10(1), pages 1-30, May.
  22. Chung-Yen Yu & Yung-Ting Chuang & Hsi-Peng Kuan, 2017. "Understanding Faculty Collaboration and Productivity: A Case Study," Asian Social Science, Canadian Center of Science and Education, vol. 13(3), pages 1-1, March.
  23. Tracy Chih-Ting Koubkova-Yu & Jung-Chi Chao & Jun-Yi Leu, 2018. "Heterologous Hsp90 promotes phenotypic diversity through network evolution," PLOS Biology, Public Library of Science, vol. 16(11), pages 1-29, November.
  24. Erica W. Carter & Orlene Guerra Peraza & Nian Wang, 2023. "The protein interactome of the citrus Huanglongbing pathogen Candidatus Liberibacter asiaticus," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
  25. Ayana Aspembitova & Ling Feng & Valentin Melnikov & Lock Yue Chew, 2019. "Fitness preferential attachment as a driving mechanism in bitcoin transaction network," PLOS ONE, Public Library of Science, vol. 14(8), pages 1-20, August.
  26. Hou, Bonan & Yao, Yiping & Liao, Dongsheng, 2012. "Identifying all-around nodes for spreading dynamics in complex networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 391(15), pages 4012-4017.
  27. Fiedor, Paweł, 2014. "Sector strength and efficiency on developed and emerging financial markets," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 413(C), pages 180-188.
  28. Wilhelm, Thomas & Hollunder, Jens, 2007. "Information theoretic description of networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 385(1), pages 385-396.
  29. Mahyar, Hamidreza & Hasheminezhad, Rouzbeh & Ghalebi K., Elahe & Nazemian, Ali & Grosu, Radu & Movaghar, Ali & Rabiee, Hamid R., 2018. "Compressive sensing of high betweenness centrality nodes in networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 497(C), pages 166-184.
  30. Ramesh Ummanni & Frederike Mundt & Heike Pospisil & Simone Venz & Christian Scharf & Christine Barett & Maria Fälth & Jens Köllermann & Reinhard Walther & Thorsten Schlomm & Guido Sauter & Carsten Bok, 2011. "Identification of Clinically Relevant Protein Targets in Prostate Cancer with 2D-DIGE Coupled Mass Spectrometry and Systems Biology Network Platform," PLOS ONE, Public Library of Science, vol. 6(2), pages 1-14, February.
  31. Huaylla, Claudia A. & Nacif, Marcos E. & Coulin, Carolina & Kuperman, Marcelo N. & Garibaldi, Lucas A., 2021. "Decoding information in multilayer ecological networks: The keystone species case," Ecological Modelling, Elsevier, vol. 460(C).
  32. Christos Ellinas & Neil Allan & Anders Johansson, 2016. "Exploring Structural Patterns Across Evolved and Designed Systems: A Network Perspective," Systems Engineering, John Wiley & Sons, vol. 19(3), pages 179-192, May.
  33. Dong, Chen & Xu, Guiqiong & Meng, Lei & Yang, Pingle, 2022. "CPR-TOPSIS: A novel algorithm for finding influential nodes in complex networks based on communication probability and relative entropy," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 603(C).
  34. Laurienti, Paul J. & Joyce, Karen E. & Telesford, Qawi K. & Burdette, Jonathan H. & Hayasaka, Satoru, 2011. "Universal fractal scaling of self-organized networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 390(20), pages 3608-3613.
  35. Gao, Jianbo & Hu, Jing, 2014. "Financial crisis, Omori's law, and negative entropy flow," International Review of Financial Analysis, Elsevier, vol. 33(C), pages 79-86.
  36. Raghav, Tanu & Jalan, Sarika, 2022. "Random matrix analysis of multiplex networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 586(C).
  37. Jiang, Nan, 2014. "WDEM: Weighted dynamics and evolution models for energy-constrained wireless sensor networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 404(C), pages 323-331.
  38. Jiawei Luo & Yi Qi, 2015. "Identification of Essential Proteins Based on a New Combination of Local Interaction Density and Protein Complexes," PLOS ONE, Public Library of Science, vol. 10(6), pages 1-27, June.
  39. Pei Wang & Shunjie Chen & Sijia Yang, 2022. "Recent Advances on Penalized Regression Models for Biological Data," Mathematics, MDPI, vol. 10(19), pages 1-24, October.
  40. Hua Yu & Jianxin Chen & Xue Xu & Yan Li & Huihui Zhao & Yupeng Fang & Xiuxiu Li & Wei Zhou & Wei Wang & Yonghua Wang, 2012. "A Systematic Prediction of Multiple Drug-Target Interactions from Chemical, Genomic, and Pharmacological Data," PLOS ONE, Public Library of Science, vol. 7(5), pages 1-14, May.
  41. Jacob D Feala & Jorge Cortes & Phillip M Duxbury & Andrew D McCulloch & Carlo Piermarocchi & Giovanni Paternostro, 2012. "Statistical Properties and Robustness of Biological Controller-Target Networks," PLOS ONE, Public Library of Science, vol. 7(1), pages 1-11, January.
  42. N. Foti & S. Pauls & Daniel N. Rockmore, 2011. "Stability of the World Trade Web over Time - An Extinction Analysis," Papers 1104.4380, arXiv.org, revised May 2011.
  43. Barlin O. Olivares & Juan C. Rey & Guillermo Perichi & Deyanira Lobo, 2022. "Relationship of Microbial Activity with Soil Properties in Banana Plantations in Venezuela," Sustainability, MDPI, vol. 14(20), pages 1-16, October.
  44. Xia Cao & Chuanyun Li & Wei Chen & Jinqiu Li & Chaoran Lin, 2020. "Research on the invulnerability and optimization of the technical cooperation innovation network based on the patent perspective—A case study of new energy vehicles," PLOS ONE, Public Library of Science, vol. 15(9), pages 1-19, September.
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