Non-Uniform Survival Rate of Heterodimerization Links in the Evolution of the Yeast Protein-Protein Interaction Network
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DOI: 10.1371/journal.pone.0001667
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- Peter Uetz & Loic Giot & Gerard Cagney & Traci A. Mansfield & Richard S. Judson & James R. Knight & Daniel Lockshon & Vaibhav Narayan & Maithreyan Srinivasan & Pascale Pochart & Alia Qureshi-Emili & Y, 2000. "A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae," Nature, Nature, vol. 403(6770), pages 623-627, February.
- Ricard V. Solé & Romualdo Pastor-Satorras & Eric Smith & Thomas B. Kepler, 2002. "A Model Of Large-Scale Proteome Evolution," Advances in Complex Systems (ACS), World Scientific Publishing Co. Pte. Ltd., vol. 5(01), pages 43-54.
- Andreas Wagner, 2001. "The Yeast Protein Interaction Network Evolves Rapidly and Contains Few Redundant Duplicate Genes," Working Papers 01-04-022, Santa Fe Institute.
- H. Jeong & S. P. Mason & A.-L. Barabási & Z. N. Oltvai, 2001. "Lethality and centrality in protein networks," Nature, Nature, vol. 411(6833), pages 41-42, May.
- Réka Albert & Hawoong Jeong & Albert-László Barabási, 2000. "Error and attack tolerance of complex networks," Nature, Nature, vol. 406(6794), pages 378-382, July.
- Jing-Dong J. Han & Nicolas Bertin & Tong Hao & Debra S. Goldberg & Gabriel F. Berriz & Lan V. Zhang & Denis Dupuy & Albertha J. M. Walhout & Michael E. Cusick & Frederick P. Roth & Marc Vidal, 2004. "Evidence for dynamically organized modularity in the yeast protein–protein interaction network," Nature, Nature, vol. 430(6995), pages 88-93, July.
- H. Jeong & B. Tombor & R. Albert & Z. N. Oltvai & A.-L. Barabási, 2000. "The large-scale organization of metabolic networks," Nature, Nature, vol. 407(6804), pages 651-654, October.
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