Prediction of Protein Domain with mRMR Feature Selection and Analysis
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pone.0039308
Download full text from publisher
References listed on IDEAS
- Xuan Xiao & Pu Wang & Kuo-Chen Chou, 2012. "iNR-PhysChem: A Sequence-Based Predictor for Identifying Nuclear Receptors and Their Subfamilies via Physical-Chemical Property Matrix," PLOS ONE, Public Library of Science, vol. 7(2), pages 1-9, February.
- Tao Huang & Lei Chen & Yu-Dong Cai & Kuo-Chen Chou, 2011. "Classification and Analysis of Regulatory Pathways Using Graph Property, Biochemical and Physicochemical Property, and Functional Property," PLOS ONE, Public Library of Science, vol. 6(9), pages 1-11, September.
- Wei-Zhong Lin & Jian-An Fang & Xuan Xiao & Kuo-Chen Chou, 2011. "iDNA-Prot: Identification of DNA Binding Proteins Using Random Forest with Grey Model," PLOS ONE, Public Library of Science, vol. 6(9), pages 1-7, September.
- Jason R. Schnell & James J. Chou, 2008. "Structure and mechanism of the M2 proton channel of influenza A virus," Nature, Nature, vol. 451(7178), pages 591-595, January.
- Sheila M Reynolds & Lukas Käll & Michael E Riffle & Jeff A Bilmes & William Stafford Noble, 2008. "Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks," PLOS Computational Biology, Public Library of Science, vol. 4(11), pages 1-14, November.
- Pu Wang & Xuan Xiao & Kuo-Chen Chou, 2011. "NR-2L: A Two-Level Predictor for Identifying Nuclear Receptor Subfamilies Based on Sequence-Derived Features," PLOS ONE, Public Library of Science, vol. 6(8), pages 1-9, August.
- Evelina Angov & Collette J Hillier & Randall L Kincaid & Jeffrey A Lyon, 2008. "Heterologous Protein Expression Is Enhanced by Harmonizing the Codon Usage Frequencies of the Target Gene with those of the Expression Host," PLOS ONE, Public Library of Science, vol. 3(5), pages 1-10, May.
- Marcelo J. Berardi & William M. Shih & Stephen C. Harrison & James J. Chou, 2011. "Mitochondrial uncoupling protein 2 structure determined by NMR molecular fragment searching," Nature, Nature, vol. 476(7358), pages 109-113, August.
- Xuan Xiao & Zhi-Cheng Wu & Kuo-Chen Chou, 2011. "A Multi-Label Classifier for Predicting the Subcellular Localization of Gram-Negative Bacterial Proteins with Both Single and Multiple Sites," PLOS ONE, Public Library of Science, vol. 6(6), pages 1-10, June.
- Kuo-Chen Chou & Hong-Bin Shen, 2010. "Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization," PLOS ONE, Public Library of Science, vol. 5(6), pages 1-11, June.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Bi-Qing Li & Tao Huang & Jian Zhang & Ning Zhang & Guo-Hua Huang & Lei Liu & Yu-Dong Cai, 2013. "An Ensemble Prognostic Model for Colorectal Cancer," PLOS ONE, Public Library of Science, vol. 8(5), pages 1-8, May.
- Xin Ma & Jing Guo & Xiao Sun, 2016. "DNABP: Identification of DNA-Binding Proteins Based on Feature Selection Using a Random Forest and Predicting Binding Residues," PLOS ONE, Public Library of Science, vol. 11(12), pages 1-20, December.
- Lei Chen & Jing Lu & Jian Zhang & Kai-Rui Feng & Ming-Yue Zheng & Yu-Dong Cai, 2013. "Predicting Chemical Toxicity Effects Based on Chemical-Chemical Interactions," PLOS ONE, Public Library of Science, vol. 8(2), pages 1-9, February.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Xiao Wang & Guo-Zheng Li, 2012. "A Multi-Label Predictor for Identifying the Subcellular Locations of Singleplex and Multiplex Eukaryotic Proteins," PLOS ONE, Public Library of Science, vol. 7(5), pages 1-9, May.
- Wu Zhu & Jian-an Fang & Yang Tang & Wenbing Zhang & Wei Du, 2012. "Digital IIR Filters Design Using Differential Evolution Algorithm with a Controllable Probabilistic Population Size," PLOS ONE, Public Library of Science, vol. 7(7), pages 1-9, July.
- Yan Xu & Jun Ding & Ling-Yun Wu & Kuo-Chen Chou, 2013. "iSNO-PseAAC: Predict Cysteine S-Nitrosylation Sites in Proteins by Incorporating Position Specific Amino Acid Propensity into Pseudo Amino Acid Composition," PLOS ONE, Public Library of Science, vol. 8(2), pages 1-7, February.
- Robert Dobosz & Jan Mućko & Ryszard Gawinecki, 2020. "Using Chou’s 5-Step Rule to Evaluate the Stability of Tautomers: Susceptibility of 2-[(Phenylimino)-methyl]-cyclohexane-1,3-diones to Tautomerization Based on the Calculated Gibbs Free Energies," Energies, MDPI, vol. 13(1), pages 1-14, January.
- Le-Le Hu & Tao Huang & Yu-Dong Cai & Kuo-Chen Chou, 2011. "Prediction of Body Fluids where Proteins are Secreted into Based on Protein Interaction Network," PLOS ONE, Public Library of Science, vol. 6(7), pages 1-8, July.
- Wenzheng Bao & Bin Yang & Rong Bao & Yuehui Chen, 2019. "LipoFNT: Lipoylation Sites Identification with Flexible Neural Tree," Complexity, Hindawi, vol. 2019, pages 1-9, July.
- Sabit Ahmed & Afrida Rahman & Md Al Mehedi Hasan & Md Khaled Ben Islam & Julia Rahman & Shamim Ahmad, 2021. "predPhogly-Site: Predicting phosphoglycerylation sites by incorporating probabilistic sequence-coupling information into PseAAC and addressing data imbalance," PLOS ONE, Public Library of Science, vol. 16(4), pages 1-17, April.
- Lili Liu & Zijun Zhang & Qian Mei & Ming Chen, 2013. "PSI: A Comprehensive and Integrative Approach for Accurate Plant Subcellular Localization Prediction," PLOS ONE, Public Library of Science, vol. 8(10), pages 1-9, October.
- Lucas Serra Moncadas & Cyrill Hofer & Paul-Adrian Bulzu & Jakob Pernthaler & Adrian-Stefan Andrei, 2024. "Freshwater genome-reduced bacteria exhibit pervasive episodes of adaptive stasis," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Bi-Qing Li & Tao Huang & Jian Zhang & Ning Zhang & Guo-Hua Huang & Lei Liu & Yu-Dong Cai, 2013. "An Ensemble Prognostic Model for Colorectal Cancer," PLOS ONE, Public Library of Science, vol. 8(5), pages 1-8, May.
- Xin Ma & Jing Guo & Xiao Sun, 2016. "DNABP: Identification of DNA-Binding Proteins Based on Feature Selection Using a Random Forest and Predicting Binding Residues," PLOS ONE, Public Library of Science, vol. 11(12), pages 1-20, December.
- Jianjun He & Hong Gu & Wenqi Liu, 2012. "Imbalanced Multi-Modal Multi-Label Learning for Subcellular Localization Prediction of Human Proteins with Both Single and Multiple Sites," PLOS ONE, Public Library of Science, vol. 7(6), pages 1-10, June.
- Antoine Gagelin & Corentin Largeau & Sandrine Masscheleyn & Mathilde S. Piel & Daniel Calderón-Mora & Frédéric Bouillaud & Jérôme Hénin & Bruno Miroux, 2023. "Molecular determinants of inhibition of UCP1-mediated respiratory uncoupling," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
- Xuan Xiao & Zhi-Cheng Wu & Kuo-Chen Chou, 2011. "A Multi-Label Classifier for Predicting the Subcellular Localization of Gram-Negative Bacterial Proteins with Both Single and Multiple Sites," PLOS ONE, Public Library of Science, vol. 6(6), pages 1-10, June.
- Kuo-Chen Chou & Hong-Bin Shen, 2010. "A New Method for Predicting the Subcellular Localization of Eukaryotic Proteins with Both Single and Multiple Sites: Euk-mPLoc 2.0," PLOS ONE, Public Library of Science, vol. 5(4), pages 1-9, April.
- Aviv A. Rosenberg & Ailie Marx & Alex M. Bronstein, 2022. "Codon-specific Ramachandran plots show amino acid backbone conformation depends on identity of the translated codon," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
- Ying Hong Li & Jing Yu Xu & Lin Tao & Xiao Feng Li & Shuang Li & Xian Zeng & Shang Ying Chen & Peng Zhang & Chu Qin & Cheng Zhang & Zhe Chen & Feng Zhu & Yu Zong Chen, 2016. "SVM-Prot 2016: A Web-Server for Machine Learning Prediction of Protein Functional Families from Sequence Irrespective of Similarity," PLOS ONE, Public Library of Science, vol. 11(8), pages 1-14, August.
- Kuo-Chen Chou & Hong-Bin Shen, 2010. "Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization," PLOS ONE, Public Library of Science, vol. 5(6), pages 1-11, June.
- Yan Tong & Hui Huang & YuHua Wang, 2021. "Genome-Wide Analysis of the Trihelix Gene Family and Their Response to Cold Stress in Dendrobium officinale," Sustainability, MDPI, vol. 13(5), pages 1-15, March.
- Bin Liu & Longyun Fang & Fule Liu & Xiaolong Wang & Junjie Chen & Kuo-Chen Chou, 2015. "Identification of Real MicroRNA Precursors with a Pseudo Structure Status Composition Approach," PLOS ONE, Public Library of Science, vol. 10(3), pages 1-20, March.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0039308. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.