Imbalanced Multi-Modal Multi-Label Learning for Subcellular Localization Prediction of Human Proteins with Both Single and Multiple Sites
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pone.0037155
Download full text from publisher
References listed on IDEAS
- Zhisong He & Jian Zhang & Xiao-He Shi & Le-Le Hu & Xiangyin Kong & Yu-Dong Cai & Kuo-Chen Chou, 2010. "Predicting Drug-Target Interaction Networks Based on Functional Groups and Biological Features," PLOS ONE, Public Library of Science, vol. 5(3), pages 1-8, March.
- Ping Wang & Lele Hu & Guiyou Liu & Nan Jiang & Xiaoyun Chen & Jianyong Xu & Wen Zheng & Li Li & Ming Tan & Zugen Chen & Hui Song & Yu-Dong Cai & Kuo-Chen Chou, 2011. "Prediction of Antimicrobial Peptides Based on Sequence Alignment and Feature Selection Methods," PLOS ONE, Public Library of Science, vol. 6(4), pages 1-9, April.
- Wei-Zhong Lin & Jian-An Fang & Xuan Xiao & Kuo-Chen Chou, 2011. "iDNA-Prot: Identification of DNA Binding Proteins Using Random Forest with Grey Model," PLOS ONE, Public Library of Science, vol. 6(9), pages 1-7, September.
- Le-Le Hu & Tao Huang & Yu-Dong Cai & Kuo-Chen Chou, 2011. "Prediction of Body Fluids where Proteins are Secreted into Based on Protein Interaction Network," PLOS ONE, Public Library of Science, vol. 6(7), pages 1-8, July.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Junzhe Cao & Wenqi Liu & Jianjun He & Hong Gu, 2013. "Mining Proteins with Non-Experimental Annotations Based on an Active Sample Selection Strategy for Predicting Protein Subcellular Localization," PLOS ONE, Public Library of Science, vol. 8(6), pages 1-9, June.
- Chi-Hua Tung & Chi-Wei Chen & Han-Hao Sun & Yen-Wei Chu, 2017. "Predicting human protein subcellular localization by heterogeneous and comprehensive approaches," PLOS ONE, Public Library of Science, vol. 12(6), pages 1-14, June.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Kai He & Yan Wang & Xuping Xie & Dan Shao, 2022. "MultiSec: Multi-Task Deep Learning Improves Secreted Protein Discovery in Human Body Fluids," Mathematics, MDPI, vol. 10(15), pages 1-17, July.
- Bi-Qing Li & Le-Le Hu & Lei Chen & Kai-Yan Feng & Yu-Dong Cai & Kuo-Chen Chou, 2012. "Prediction of Protein Domain with mRMR Feature Selection and Analysis," PLOS ONE, Public Library of Science, vol. 7(6), pages 1-14, June.
- Wenzheng Bao & Bin Yang & Rong Bao & Yuehui Chen, 2019. "LipoFNT: Lipoylation Sites Identification with Flexible Neural Tree," Complexity, Hindawi, vol. 2019, pages 1-9, July.
- Xiao Wang & Guo-Zheng Li, 2012. "A Multi-Label Predictor for Identifying the Subcellular Locations of Singleplex and Multiplex Eukaryotic Proteins," PLOS ONE, Public Library of Science, vol. 7(5), pages 1-9, May.
- Sabit Ahmed & Afrida Rahman & Md Al Mehedi Hasan & Md Khaled Ben Islam & Julia Rahman & Shamim Ahmad, 2021. "predPhogly-Site: Predicting phosphoglycerylation sites by incorporating probabilistic sequence-coupling information into PseAAC and addressing data imbalance," PLOS ONE, Public Library of Science, vol. 16(4), pages 1-17, April.
- Giuseppe Maccari & Mariagrazia Di Luca & Riccardo Nifosà & Francesco Cardarelli & Giovanni Signore & Claudia Boccardi & Angelo Bifone, 2013. "Antimicrobial Peptides Design by Evolutionary Multiobjective Optimization," PLOS Computational Biology, Public Library of Science, vol. 9(9), pages 1-12, September.
- Yan Xu & Jun Ding & Ling-Yun Wu & Kuo-Chen Chou, 2013. "iSNO-PseAAC: Predict Cysteine S-Nitrosylation Sites in Proteins by Incorporating Position Specific Amino Acid Propensity into Pseudo Amino Acid Composition," PLOS ONE, Public Library of Science, vol. 8(2), pages 1-7, February.
- Xin Ma & Jing Guo & Xiao Sun, 2016. "DNABP: Identification of DNA-Binding Proteins Based on Feature Selection Using a Random Forest and Predicting Binding Residues," PLOS ONE, Public Library of Science, vol. 11(12), pages 1-20, December.
- Wu Zhu & Jian-an Fang & Yang Tang & Wenbing Zhang & Wei Du, 2012. "Digital IIR Filters Design Using Differential Evolution Algorithm with a Controllable Probabilistic Population Size," PLOS ONE, Public Library of Science, vol. 7(7), pages 1-9, July.
- Guohua Huang & Yuchao Zhang & Lei Chen & Ning Zhang & Tao Huang & Yu-Dong Cai, 2014. "Prediction of Multi-Type Membrane Proteins in Human by an Integrated Approach," PLOS ONE, Public Library of Science, vol. 9(3), pages 1-11, March.
- Catherine Mooney & Niall J Haslam & Gianluca Pollastri & Denis C Shields, 2012. "Towards the Improved Discovery and Design of Functional Peptides: Common Features of Diverse Classes Permit Generalized Prediction of Bioactivity," PLOS ONE, Public Library of Science, vol. 7(10), pages 1-12, October.
- Bin Liu & Longyun Fang & Fule Liu & Xiaolong Wang & Junjie Chen & Kuo-Chen Chou, 2015. "Identification of Real MicroRNA Precursors with a Pseudo Structure Status Composition Approach," PLOS ONE, Public Library of Science, vol. 10(3), pages 1-20, March.
- Yu-Fei Gao & Lei Chen & Yu-Dong Cai & Kai-Yan Feng & Tao Huang & Yang Jiang, 2012. "Predicting Metabolic Pathways of Small Molecules and Enzymes Based on Interaction Information of Chemicals and Proteins," PLOS ONE, Public Library of Science, vol. 7(9), pages 1-9, September.
- Ingoo Lee & Jongsoo Keum & Hojung Nam, 2019. "DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences," PLOS Computational Biology, Public Library of Science, vol. 15(6), pages 1-21, June.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0037155. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.