Freshwater genome-reduced bacteria exhibit pervasive episodes of adaptive stasis
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DOI: 10.1038/s41467-024-47767-7
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- Xukang Shen & Siliang Song & Chuan Li & Jianzhi Zhang, 2022. "Synonymous mutations in representative yeast genes are mostly strongly non-neutral," Nature, Nature, vol. 606(7915), pages 725-731, June.
- Akintunde Emiola & Julia Oh, 2018. "High throughput in situ metagenomic measurement of bacterial replication at ultra-low sequencing coverage," Nature Communications, Nature, vol. 9(1), pages 1-8, December.
- Edward Geisinger & Nadav J. Mortman & Yunfei Dai & Murat Cokol & Sapna Syal & Andrew Farinha & Delaney G. Fisher & Amy Y. Tang & David W. Lazinski & Stephen Wood & Jon Anthony & Tim Opijnen & Ralph R., 2020. "Antibiotic susceptibility signatures identify potential antimicrobial targets in the Acinetobacter baumannii cell envelope," Nature Communications, Nature, vol. 11(1), pages 1-16, December.
- Chirag Jain & Luis M. Rodriguez-R & Adam M. Phillippy & Konstantinos T. Konstantinidis & Srinivas Aluru, 2018. "High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries," Nature Communications, Nature, vol. 9(1), pages 1-8, December.
- Edward Geisinger & Nadav J. Mortman & Yunfei Dai & Murat Cokol & Sapna Syal & Andrew Farinha & Delaney G. Fisher & Amy Y. Tang & David W. Lazinski & Stephen Wood & Jon Anthony & Tim Opijnen & Ralph R., 2020. "Author Correction: Antibiotic susceptibility signatures identify potential antimicrobial targets in the Acinetobacter baumannii cell envelope," Nature Communications, Nature, vol. 11(1), pages 1-1, December.
- Lynn J. Rothschild & Rocco L. Mancinelli, 2001. "Life in extreme environments," Nature, Nature, vol. 409(6823), pages 1092-1101, February.
- Sheila M Reynolds & Lukas Käll & Michael E Riffle & Jeff A Bilmes & William Stafford Noble, 2008. "Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks," PLOS Computational Biology, Public Library of Science, vol. 4(11), pages 1-14, November.
- Brent C. Christner & John C. Priscu & Amanda M. Achberger & Carlo Barbante & Sasha P. Carter & Knut Christianson & Alexander B. Michaud & Jill A. Mikucki & Andrew C. Mitchell & Mark L. Skidmore & Tris, 2014. "A microbial ecosystem beneath the West Antarctic ice sheet," Nature, Nature, vol. 512(7514), pages 310-313, August.
- Brent C. Christner & John C. Priscu & Amanda M. Achberger & Carlo Barbante & Sasha P. Carter & Knut Christianson & Alexander B. Michaud & Jill A. Mikucki & Andrew C. Mitchell & Mark L. Skidmore & Tris, 2014. "Correction: Corrigendum: A microbial ecosystem beneath the West Antarctic ice sheet," Nature, Nature, vol. 514(7522), pages 394-394, October.
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