A Spatio-Temporal Model of Notch Signalling in the Zebrafish Segmentation Clock: Conditions for Synchronised Oscillatory Dynamics
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DOI: 10.1371/journal.pone.0016980
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- Yun-Jin Jiang & Birgit L. Aerne & Lucy Smithers & Catherine Haddon & David Ish-Horowicz & Julian Lewis, 2000. "Notch signalling and the synchronization of the somite segmentation clock," Nature, Nature, vol. 408(6811), pages 475-479, November.
- Olivier Cinquin, 2007. "Repressor Dimerization in the Zebrafish Somitogenesis Clock," PLOS Computational Biology, Public Library of Science, vol. 3(2), pages 1-11, February.
- Ertuğrul M Özbudak & Julian Lewis, 2008. "Notch Signalling Synchronizes the Zebrafish Segmentation Clock but Is Not Needed To Create Somite Boundaries," PLOS Genetics, Public Library of Science, vol. 4(2), pages 1-11, February.
- Céline Gomez & Ertuğrul M. Özbudak & Joshua Wunderlich & Diana Baumann & Julian Lewis & Olivier Pourquié, 2008. "Control of segment number in vertebrate embryos," Nature, Nature, vol. 454(7202), pages 335-339, July.
- Kazuki Horikawa & Kana Ishimatsu & Eiichi Yoshimoto & Shigeru Kondo & Hiroyuki Takeda, 2006. "Noise-resistant and synchronized oscillation of the segmentation clock," Nature, Nature, vol. 441(7094), pages 719-723, June.
- François Giudicelli & Ertuğrul M Özbudak & Gavin J Wright & Julian Lewis, 2007. "Setting the Tempo in Development: An Investigation of the Zebrafish Somite Clock Mechanism," PLOS Biology, Public Library of Science, vol. 5(6), pages 1-15, May.
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