Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights
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DOI: 10.1371/journal.pcbi.1004977
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- Daniel Chang & Vinod K. Gupta & Benjamin Hur & Sergio Cobo-López & Kevin Y. Cunningham & Nam Soo Han & Insuk Lee & Vanessa L. Kronzer & Levi M. Teigen & Lioudmila V. Karnatovskaia & Erin E. Longbrake , 2024. "Gut Microbiome Wellness Index 2 enhances health status prediction from gut microbiome taxonomic profiles," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Francesca De Filippis & Vincenzo Valentino & Giuseppina Sequino & Giorgia Borriello & Marita Georgia Riccardi & Biancamaria Pierri & Pellegrino Cerino & Antonio Pizzolante & Edoardo Pasolli & Mauro Es, 2024. "Exposure to environmental pollutants selects for xenobiotic-degrading functions in the human gut microbiome," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
- Jaron Thompson & Renee Johansen & John Dunbar & Brian Munsky, 2019. "Machine learning to predict microbial community functions: An analysis of dissolved organic carbon from litter decomposition," PLOS ONE, Public Library of Science, vol. 14(7), pages 1-16, July.
- Alan Le Goallec & Braden T Tierney & Jacob M Luber & Evan M Cofer & Aleksandar D Kostic & Chirag J Patel, 2020. "A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type," PLOS Computational Biology, Public Library of Science, vol. 16(5), pages 1-21, May.
- Hung-Chih Chen & Yen-Wen Liu & Kuan-Cheng Chang & Yen-Wen Wu & Yi-Ming Chen & Yu-Kai Chao & Min-Yi You & David J. Lundy & Chen-Ju Lin & Marvin L. Hsieh & Yu-Che Cheng & Ray P. Prajnamitra & Po-Ju Lin , 2023. "Gut butyrate-producers confer post-infarction cardiac protection," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Francesca De Filippis & Lorella Paparo & Rita Nocerino & Giusy Della Gatta & Laura Carucci & Roberto Russo & Edoardo Pasolli & Danilo Ercolini & Roberto Berni Canani, 2021. "Specific gut microbiome signatures and the associated pro-inflamatory functions are linked to pediatric allergy and acquisition of immune tolerance," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
- Qi Su & Qin Liu & Raphaela Iris Lau & Jingwan Zhang & Zhilu Xu & Yun Kit Yeoh & Thomas W. H. Leung & Whitney Tang & Lin Zhang & Jessie Q. Y. Liang & Yuk Kam Yau & Jiaying Zheng & Chengyu Liu & Mengjin, 2022. "Faecal microbiome-based machine learning for multi-class disease diagnosis," Nature Communications, Nature, vol. 13(1), pages 1-8, December.
- Efrat Muller & Itamar Shiryan & Elhanan Borenstein, 2024. "Multi-omic integration of microbiome data for identifying disease-associated modules," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Sean M Gibbons & Claire Duvallet & Eric J Alm, 2018. "Correcting for batch effects in case-control microbiome studies," PLOS Computational Biology, Public Library of Science, vol. 14(4), pages 1-17, April.
- Youwen Qin & Xin Tong & Wei-Jian Mei & Yanshuang Cheng & Yuanqiang Zou & Kai Han & Jiehai Yu & Zhuye Jie & Tao Zhang & Shida Zhu & Xin Jin & Jian Wang & Huanming Yang & Xun Xu & Huanzi Zhong & Liang X, 2024. "Consistent signatures in the human gut microbiome of old- and young-onset colorectal cancer," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
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