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A rationally designed miniature of soluble methane monooxygenase enables rapid and high-yield methanol production in Escherichia coli

Author

Listed:
  • Yeonhwa Yu

    (Korea University)

  • Yongfan Shi

    (Sogang University)

  • Young Wan Kwon

    (Korea University)

  • Yoobin Choi

    (Korea University)

  • Yusik Kim

    (Korea University)

  • Jeong-Geol Na

    (Sogang University)

  • June Huh

    (Korea University)

  • Jeewon Lee

    (Korea University)

Abstract

Soluble methane monooxygenase (sMMO) oxidizes a wide range of carbon feedstocks (C1 to C8) directly using intracellular NADH and is a useful means in developing green routes for industrial manufacturing of chemicals. However, the high-throughput biosynthesis of active recombinant sMMO and the ensuing catalytic oxidation have so far been unsuccessful due to the structural and functional complexity of sMMO, comprised of three functionally complementary components, which remains a major challenge for its industrial applications. Here we develop a catalytically active miniature of sMMO (mini-sMMO), with a turnover frequency of 0.32 s−1, through an optimal reassembly of minimal and modified components of sMMO on catalytically inert and stable apoferritin scaffold. We characterise the molecular characteristics in detail through in silico and experimental analyses and verifications. Notably, in-situ methanol production in a high-cell-density culture of mini-sMMO-expressing recombinant Escherichia coli resulted in higher yield and productivity (~ 3.0 g/L and 0.11 g/L/h, respectively) compared to traditional methanotrophic production.

Suggested Citation

  • Yeonhwa Yu & Yongfan Shi & Young Wan Kwon & Yoobin Choi & Yusik Kim & Jeong-Geol Na & June Huh & Jeewon Lee, 2024. "A rationally designed miniature of soluble methane monooxygenase enables rapid and high-yield methanol production in Escherichia coli," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-48671-w
    DOI: 10.1038/s41467-024-48671-w
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    References listed on IDEAS

    as
    1. Seung Jae Lee & Michael S. McCormick & Stephen J. Lippard & Uhn-Soo Cho, 2013. "Control of substrate access to the active site in methane monooxygenase," Nature, Nature, vol. 494(7437), pages 380-384, February.
    2. Philipp Keller & Michael A. Reiter & Patrick Kiefer & Thomas Gassler & Lucas Hemmerle & Philipp Christen & Elad Noor & Julia A. Vorholt, 2022. "Generation of an Escherichia coli strain growing on methanol via the ribulose monophosphate cycle," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    3. Christopher C. Page & Christopher C. Moser & Xiaoxi Chen & P. Leslie Dutton, 1999. "Natural engineering principles of electron tunnelling in biological oxidation–reduction," Nature, Nature, vol. 402(6757), pages 47-52, November.
    4. M. G. Kalyuzhnaya & S. Yang & O. N. Rozova & N. E. Smalley & J. Clubb & A. Lamb & G. A. Nagana Gowda & D. Raftery & Y. Fu & F. Bringel & S. Vuilleumier & D. A. C. Beck & Y. A. Trotsenko & V. N. Khmele, 2013. "Highly efficient methane biocatalysis revealed in a methanotrophic bacterium," Nature Communications, Nature, vol. 4(1), pages 1-7, December.
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