IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v14y2023i1d10.1038_s41467-023-42927-7.html
   My bibliography  Save this article

Structure of a membrane-bound menaquinol:organohalide oxidoreductase

Author

Listed:
  • Lorenzo Cimmino

    (Ecole Polytechnique Fédérale de Lausanne (EPFL))

  • Américo G. Duarte

    (Universidade NOVA de Lisboa)

  • Dongchun Ni

    (University of Lausanne)

  • Babatunde E. Ekundayo

    (University of Lausanne)

  • Inês A. C. Pereira

    (Universidade NOVA de Lisboa)

  • Henning Stahlberg

    (University of Lausanne)

  • Christof Holliger

    (Ecole Polytechnique Fédérale de Lausanne (EPFL))

  • Julien Maillard

    (Ecole Polytechnique Fédérale de Lausanne (EPFL))

Abstract

Organohalide-respiring bacteria are key organisms for the bioremediation of soils and aquifers contaminated with halogenated organic compounds. The major players in this process are respiratory reductive dehalogenases, corrinoid enzymes that use organohalides as substrates and contribute to energy conservation. Here, we present the structure of a menaquinol:organohalide oxidoreductase obtained by cryo-EM. The membrane-bound protein was isolated from Desulfitobacterium hafniense strain TCE1 as a PceA2B2 complex catalysing the dechlorination of tetrachloroethene. Two catalytic PceA subunits are anchored to the membrane by two small integral membrane PceB subunits. The structure reveals two menaquinone molecules bound at the interface of the two different subunits, which are the starting point of a chain of redox cofactors for electron transfer to the active site. In this work, the structure elucidates how energy is conserved during organohalide respiration in menaquinone-dependent organohalide-respiring bacteria.

Suggested Citation

  • Lorenzo Cimmino & Américo G. Duarte & Dongchun Ni & Babatunde E. Ekundayo & Inês A. C. Pereira & Henning Stahlberg & Christof Holliger & Julien Maillard, 2023. "Structure of a membrane-bound menaquinol:organohalide oxidoreductase," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42927-7
    DOI: 10.1038/s41467-023-42927-7
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-42927-7
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-023-42927-7?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Cindy Kunze & Martin Bommer & Wilfred R. Hagen & Marie Uksa & Holger Dobbek & Torsten Schubert & Gabriele Diekert, 2017. "Cobamide-mediated enzymatic reductive dehalogenation via long-range electron transfer," Nature Communications, Nature, vol. 8(1), pages 1-11, August.
    2. Christopher C. Page & Christopher C. Moser & Xiaoxi Chen & P. Leslie Dutton, 1999. "Natural engineering principles of electron tunnelling in biological oxidation–reduction," Nature, Nature, vol. 402(6757), pages 47-52, November.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Fangzhu Han & Yiqi Hu & Mengchen Wu & Zhaoxiang He & Hongtao Tian & Long Zhou, 2023. "Structures of Tetrahymena thermophila respiratory megacomplexes on the tubular mitochondrial cristae," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    2. Ralf Steinhilper & Gabriele Höff & Johann Heider & Bonnie J. Murphy, 2022. "Structure of the membrane-bound formate hydrogenlyase complex from Escherichia coli," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    3. Yeonhwa Yu & Yongfan Shi & Young Wan Kwon & Yoobin Choi & Yusik Kim & Jeong-Geol Na & June Huh & Jeewon Lee, 2024. "A rationally designed miniature of soluble methane monooxygenase enables rapid and high-yield methanol production in Escherichia coli," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    4. Anuj Kumar & Florian Kremp & Jennifer Roth & Sven A. Freibert & Volker Müller & Jan M. Schuller, 2023. "Molecular architecture and electron transfer pathway of the Stn family transhydrogenase," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    5. Jiashen Zhou & Lin Zhang & Liping Zeng & Lu Yu & Yuanyuan Duan & Siqi Shen & Jingyan Hu & Pan Zhang & Wenyan Song & Xiaoxue Ruan & Jing Jiang & Yinan Zhang & Lu Zhou & Jia Jia & Xudong Hang & Changlin, 2021. "Helicobacter pylori FabX contains a [4Fe-4S] cluster essential for unsaturated fatty acid synthesis," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
    6. Jun-ichi Kishikawa & Moe Ishikawa & Takahiro Masuya & Masatoshi Murai & Yuki Kitazumi & Nicole L. Butler & Takayuki Kato & Blanca Barquera & Hideto Miyoshi, 2022. "Cryo-EM structures of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    7. Suk Min Kim & Sung Heuck Kang & Jinhee Lee & Yoonyoung Heo & Eleni G. Poloniataki & Jingu Kang & Hye-Jin Yoon & So Yeon Kong & Yaejin Yun & Hyunwoo Kim & Jungki Ryu & Hyung Ho Lee & Yong Hwan Kim, 2024. "Identifying a key spot for electron mediator-interaction to tailor CO dehydrogenase’s affinity," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    8. Nathan M. Ennist & Zhenyu Zhao & Steven E. Stayrook & Bohdana M. Discher & P. Leslie Dutton & Christopher C. Moser, 2022. "De novo protein design of photochemical reaction centers," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    9. Daniel Riepl & Ana P. Gamiz-Hernandez & Terezia Kovalova & Sylwia M. Król & Sophie L. Mader & Dan Sjöstrand & Martin Högbom & Peter Brzezinski & Ville R. I. Kaila, 2024. "Long-range charge transfer mechanism of the III2IV2 mycobacterial supercomplex," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    10. Emanuela Gatto & Raffaella Lettieri & Luigi Vesce & Mariano Venanzi, 2022. "Peptide Materials in Dye Sensitized Solar Cells," Energies, MDPI, vol. 15(15), pages 1-13, August.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42927-7. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.