Mapping protein states and interactions across the tree of life with co-fractionation mass spectrometry
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-023-44139-5
Download full text from publisher
References listed on IDEAS
- Ronghui Lou & Weizhen Liu & Rongjie Li & Shanshan Li & Xuming He & Wenqing Shui, 2021. "DeepPhospho accelerates DIA phosphoproteome profiling through in silico library generation," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
- Stephen Oliver, 2000. "Guilt-by-association goes global," Nature, Nature, vol. 403(6770), pages 601-602, February.
- Christian von Mering & Roland Krause & Berend Snel & Michael Cornell & Stephen G. Oliver & Stanley Fields & Peer Bork, 2002. "Comparative assessment of large-scale data sets of protein–protein interactions," Nature, Nature, vol. 417(6887), pages 399-403, May.
- Aikaterini Geladaki & Nina Kočevar Britovšek & Lisa M. Breckels & Tom S. Smith & Owen L. Vennard & Claire M. Mulvey & Oliver M. Crook & Laurent Gatto & Kathryn S. Lilley, 2019. "Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics," Nature Communications, Nature, vol. 10(1), pages 1-15, December.
- Edward L. Huttlin & Raphael J. Bruckner & Joao A. Paulo & Joe R. Cannon & Lily Ting & Kurt Baltier & Greg Colby & Fana Gebreab & Melanie P. Gygi & Hannah Parzen & John Szpyt & Stanley Tam & Gabriela Z, 2017. "Architecture of the human interactome defines protein communities and disease networks," Nature, Nature, vol. 545(7655), pages 505-509, May.
- Katja Luck & Dae-Kyum Kim & Luke Lambourne & Kerstin Spirohn & Bridget E. Begg & Wenting Bian & Ruth Brignall & Tiziana Cafarelli & Francisco J. Campos-Laborie & Benoit Charloteaux & Dongsic Choi & At, 2020. "A reference map of the human binary protein interactome," Nature, Nature, vol. 580(7803), pages 402-408, April.
- Cuihong Wan & Blake Borgeson & Sadhna Phanse & Fan Tu & Kevin Drew & Greg Clark & Xuejian Xiong & Olga Kagan & Julian Kwan & Alexandr Bezginov & Kyle Chessman & Swati Pal & Graham Cromar & Ophelia Pap, 2015. "Panorama of ancient metazoan macromolecular complexes," Nature, Nature, vol. 525(7569), pages 339-344, September.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Nilesh Kumar & M. Shahid Mukhtar, 2024. "Viral Targets in the Human Interactome with Comprehensive Centrality Analysis: SARS-CoV-2, a Case Study," Data, MDPI, vol. 9(8), pages 1-12, August.
- Oliver M Crook & Aikaterini Geladaki & Daniel J H Nightingale & Owen L Vennard & Kathryn S Lilley & Laurent Gatto & Paul D W Kirk, 2020. "A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection," PLOS Computational Biology, Public Library of Science, vol. 16(11), pages 1-21, November.
- Yudong Gao & Daichi Shonai & Matthew Trn & Jieqing Zhao & Erik J. Soderblom & S. Alexandra Garcia-Moreno & Charles A. Gersbach & William C. Wetsel & Geraldine Dawson & Dmitry Velmeshev & Yong-hui Jian, 2024. "Proximity analysis of native proteomes reveals phenotypic modifiers in a mouse model of autism and related neurodevelopmental conditions," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
- Yesheng Fu & Lei Li & Xin Zhang & Zhikang Deng & Ying Wu & Wenzhe Chen & Yuchen Liu & Shan He & Jian Wang & Yuping Xie & Zhiwei Tu & Yadi Lyu & Yange Wei & Shujie Wang & Chun-Ping Cui & Cui Hua Liu & , 2024. "Systematic HOIP interactome profiling reveals critical roles of linear ubiquitination in tissue homeostasis," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
- Patrick Bryant & Gabriele Pozzati & Arne Elofsson, 2022. "Improved prediction of protein-protein interactions using AlphaFold2," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
- Hong-Wen Tang & Kerstin Spirohn & Yanhui Hu & Tong Hao & István A. Kovács & Yue Gao & Richard Binari & Donghui Yang-Zhou & Kenneth H. Wan & Joel S. Bader & Dawit Balcha & Wenting Bian & Benjamin W. Bo, 2023. "Next-generation large-scale binary protein interaction network for Drosophila melanogaster," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Bai, Ling & Xiong, Long & Zhao, Na & Xia, Ke & Jiang, Xiong-Fei, 2022. "Dynamical structure of social map in ancient China," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 607(C).
- Weize Wang & Ling Liang & Zonglin Dai & Peng Zuo & Shang Yu & Yishuo Lu & Dian Ding & Hongyi Chen & Hui Shan & Yan Jin & Youdong Mao & Yuxin Yin, 2024. "A conserved N-terminal motif of CUL3 contributes to assembly and E3 ligase activity of CRL3KLHL22," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Mingshuo Nie & Dongming Chen & Dongqi Wang, 2022. "Graph Embedding Method Based on Biased Walking for Link Prediction," Mathematics, MDPI, vol. 10(20), pages 1-13, October.
- Jordan Currie & Vyshnavi Manda & Sean K. Robinson & Celine Lai & Vertica Agnihotri & Veronica Hidalgo & R. W. Ludwig & Kai Zhang & Jay Pavelka & Zhao V. Wang & June-Wha Rhee & Maggie P. Y. Lam & Edwar, 2024. "Simultaneous proteome localization and turnover analysis reveals spatiotemporal features of protein homeostasis disruptions," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
- Gergo Gogl & Boglarka Zambo & Camille Kostmann & Alexandra Cousido-Siah & Bastien Morlet & Fabien Durbesson & Luc Negroni & Pascal Eberling & Pau Jané & Yves Nominé & Andras Zeke & Søren Østergaard & , 2022. "Quantitative fragmentomics allow affinity mapping of interactomes," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
- Jiang, Xiongfei & Xiong, Long & Bai, Ling & Zhao, Na & Zhang, Jiu & Xia, Ke & Deng, Kai & Zheng, Bo, 2021. "Quantifying the social structure of elites in ancient China," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 573(C).
- Akshat Singhal & Song Cao & Christopher Churas & Dexter Pratt & Santo Fortunato & Fan Zheng & Trey Ideker, 2020. "Multiscale community detection in Cytoscape," PLOS Computational Biology, Public Library of Science, vol. 16(10), pages 1-10, October.
- Sabrina Villar-Pazos & Laurel Thomas & Yunhan Yang & Kun Chen & Jenea B. Lyles & Bradley J. Deitch & Joseph Ochaba & Karen Ling & Berit Powers & Sebastien Gingras & Holly B. Kordasiewicz & Melanie J. , 2023. "Neural deficits in a mouse model of PACS1 syndrome are corrected with PACS1- or HDAC6-targeting therapy," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
- Xing Chen & Chunyu Yu & Xinhua Liu & Beibei Liu & Xiaodi Wu & Jiajing Wu & Dong Yan & Lulu Han & Zifan Tang & Xinyi Yuan & Jianqiu Wang & Yue Wang & Shumeng Liu & Lin Shan & Yongfeng Shang, 2022. "Intracellular galectin-3 is a lipopolysaccharide sensor that promotes glycolysis through mTORC1 activation," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
- Patrick Bryant & Gabriele Pozzati & Wensi Zhu & Aditi Shenoy & Petras Kundrotas & Arne Elofsson, 2022. "Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
- Dongmin Bang & Sangsoo Lim & Sangseon Lee & Sun Kim, 2023. "Biomedical knowledge graph learning for drug repurposing by extending guilt-by-association to multiple layers," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
- Xinxin Xu & Sheng Ma & Ziqiang Zeng, 2019. "Complex network analysis of bilateral international investment under de-globalization: Structural properties and evolution," PLOS ONE, Public Library of Science, vol. 14(4), pages 1-16, April.
- Yi Yang & Qun Fang, 2024. "Prediction of glycopeptide fragment mass spectra by deep learning," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
- Shilin Sun & Hua Tian & Runze Wang & Zehua Zhang, 2023. "Biomedical Interaction Prediction with Adaptive Line Graph Contrastive Learning," Mathematics, MDPI, vol. 11(3), pages 1-14, February.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-44139-5. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.