Isoform-resolved transcriptome of the human preimplantation embryo
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-023-42558-y
Download full text from publisher
References listed on IDEAS
- Jingyi Wu & Jiawei Xu & Bofeng Liu & Guidong Yao & Peizhe Wang & Zili Lin & Bo Huang & Xuepeng Wang & Tong Li & Senlin Shi & Nan Zhang & Fuyu Duan & Jia Ming & Xiangyang Zhang & Wenbin Niu & Wenyan So, 2018. "Publisher Correction: Chromatin analysis in human early development reveals epigenetic transition during ZGA," Nature, Nature, vol. 560(7718), pages 27-27, August.
- John Arne Dahl & Inkyung Jung & Håvard Aanes & Gareth D. Greggains & Adeel Manaf & Mads Lerdrup & Guoqiang Li & Samantha Kuan & Bin Li & Ah Young Lee & Sebastian Preissl & Ingunn Jermstad & Mads Haugl, 2016. "Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition," Nature, Nature, vol. 537(7621), pages 548-552, September.
- Kun Wang & Dehe Wang & Xiaomin Zheng & Ai Qin & Jie Zhou & Boyu Guo & Yanjun Chen & Xingpeng Wen & Wen Ye & Yu Zhou & Yuxian Zhu, 2019. "Multi-strategic RNA-seq analysis reveals a high-resolution transcriptional landscape in cotton," Nature Communications, Nature, vol. 10(1), pages 1-15, December.
- Hongshan Guo & Ping Zhu & Liying Yan & Rong Li & Boqiang Hu & Ying Lian & Jie Yan & Xiulian Ren & Shengli Lin & Junsheng Li & Xiaohu Jin & Xiaodan Shi & Ping Liu & Xiaoye Wang & Wei Wang & Yuan Wei & , 2014. "The DNA methylation landscape of human early embryos," Nature, Nature, vol. 511(7511), pages 606-610, July.
- Marta N. Shahbazi & Tianren Wang & Xin Tao & Bailey A. T. Weatherbee & Li Sun & Yiping Zhan & Laura Keller & Gary D. Smith & Antonio Pellicer & Richard T. Scott & Emre Seli & Magdalena Zernicka-Goetz, 2020. "Developmental potential of aneuploid human embryos cultured beyond implantation," Nature Communications, Nature, vol. 11(1), pages 1-15, December.
- Harunobu Kagawa & Alok Javali & Heidar Heidari Khoei & Theresa Maria Sommer & Giovanni Sestini & Maria Novatchkova & Yvonne Scholte op Reimer & Gaël Castel & Alexandre Bruneau & Nina Maenhoudt & Jenna, 2022. "Human blastoids model blastocyst development and implantation," Nature, Nature, vol. 601(7894), pages 600-605, January.
- Zhigang Xue & Kevin Huang & Chaochao Cai & Lingbo Cai & Chun-yan Jiang & Yun Feng & Zhenshan Liu & Qiao Zeng & Liming Cheng & Yi E. Sun & Jia-yin Liu & Steve Horvath & Guoping Fan, 2013. "Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing," Nature, Nature, vol. 500(7464), pages 593-597, August.
- Xiaodong Liu & Jia Ping Tan & Jan Schröder & Asma Aberkane & John F. Ouyang & Monika Mohenska & Sue Mei Lim & Yu B. Y. Sun & Joseph Chen & Guizhi Sun & Yichen Zhou & Daniel Poppe & Ryan Lister & Amand, 2021. "Modelling human blastocysts by reprogramming fibroblasts into iBlastoids," Nature, Nature, vol. 591(7851), pages 627-632, March.
- Zachary D. Smith & Michelle M. Chan & Kathryn C. Humm & Rahul Karnik & Shila Mekhoubad & Aviv Regev & Kevin Eggan & Alexander Meissner, 2014. "DNA methylation dynamics of the human preimplantation embryo," Nature, Nature, vol. 511(7511), pages 611-615, July.
- Virpi Töhönen & Shintaro Katayama & Liselotte Vesterlund & Eeva-Mari Jouhilahti & Mona Sheikhi & Elo Madissoon & Giuditta Filippini-Cattaneo & Marisa Jaconi & Anna Johnsson & Thomas R. Bürglin & Sten , 2015. "Novel PRD-like homeodomain transcription factors and retrotransposon elements in early human development," Nature Communications, Nature, vol. 6(1), pages 1-9, November.
- Yunbo Qiao & Chao Ren & Shisheng Huang & Jie Yuan & Xingchen Liu & Jiao Fan & Jianxiang Lin & Susu Wu & Qiuzhen Chen & Xiaochen Bo & Xiangyang Li & Xingxu Huang & Zhen Liu & Wenjie Shu, 2020. "High-resolution annotation of the mouse preimplantation embryo transcriptome using long-read sequencing," Nature Communications, Nature, vol. 11(1), pages 1-13, December.
- Bo Wang & Elizabeth Tseng & Michael Regulski & Tyson A Clark & Ting Hon & Yinping Jiao & Zhenyuan Lu & Andrew Olson & Joshua C. Stein & Doreen Ware, 2016. "Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing," Nature Communications, Nature, vol. 7(1), pages 1-13, September.
- Longqi Liu & Lizhi Leng & Chuanyu Liu & Changfu Lu & Yue Yuan & Liang Wu & Fei Gong & Shuoping Zhang & Xiaoyu Wei & Mingyue Wang & Lei Zhao & Liang Hu & Jian Wang & Huanming Yang & Shida Zhu & Fang Ch, 2019. "An integrated chromatin accessibility and transcriptome landscape of human pre-implantation embryos," Nature Communications, Nature, vol. 10(1), pages 1-11, December.
- Eric L. Nostrand & Peter Freese & Gabriel A. Pratt & Xiaofeng Wang & Xintao Wei & Rui Xiao & Steven M. Blue & Jia-Yu Chen & Neal A. L. Cody & Daniel Dominguez & Sara Olson & Balaji Sundararaman & Liju, 2020. "A large-scale binding and functional map of human RNA-binding proteins," Nature, Nature, vol. 583(7818), pages 711-719, July.
- Jingyi Wu & Jiawei Xu & Bofeng Liu & Guidong Yao & Peizhe Wang & Zili Lin & Bo Huang & Xuepeng Wang & Tong Li & Senlin Shi & Nan Zhang & Fuyu Duan & Jia Ming & Xiangyang Zhang & Wenbin Niu & Wenyan So, 2018. "Chromatin analysis in human early development reveals epigenetic transition during ZGA," Nature, Nature, vol. 557(7704), pages 256-260, May.
- Bingjie Zhang & Hui Zheng & Bo Huang & Wenzhi Li & Yunlong Xiang & Xu Peng & Jia Ming & Xiaotong Wu & Yu Zhang & Qianhua Xu & Wenqiang Liu & Xiaochen Kou & Yanhong Zhao & Wenteng He & Chong Li & Bo Ch, 2016. "Allelic reprogramming of the histone modification H3K4me3 in early mammalian development," Nature, Nature, vol. 537(7621), pages 553-557, September.
- Mette Bentsen & Philipp Goymann & Hendrik Schultheis & Kathrin Klee & Anastasiia Petrova & René Wiegandt & Annika Fust & Jens Preussner & Carsten Kuenne & Thomas Braun & Johnny Kim & Mario Looso, 2020. "ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation," Nature Communications, Nature, vol. 11(1), pages 1-11, December.
- Leqian Yu & Yulei Wei & Jialei Duan & Daniel A. Schmitz & Masahiro Sakurai & Lei Wang & Kunhua Wang & Shuhua Zhao & Gary C. Hon & Jun Wu, 2021. "Blastocyst-like structures generated from human pluripotent stem cells," Nature, Nature, vol. 591(7851), pages 620-626, March.
- Leqian Yu & Yulei Wei & Jialei Duan & Daniel A. Schmitz & Masahiro Sakurai & Lei Wang & Kunhua Wang & Shuhua Zhao & Gary C. Hon & Jun Wu, 2021. "Author Correction: Blastocyst-like structures generated from human pluripotent stem cells," Nature, Nature, vol. 596(7872), pages 5-5, August.
- Erica C. Pehrsson & Mayank N. K. Choudhary & Vasavi Sundaram & Ting Wang, 2019. "The epigenomic landscape of transposable elements across normal human development and anatomy," Nature Communications, Nature, vol. 10(1), pages 1-16, December.
- Alessia Deglincerti & Gist F. Croft & Lauren N. Pietila & Magdalena Zernicka-Goetz & Eric D. Siggia & Ali H. Brivanlou, 2016. "Self-organization of the in vitro attached human embryo," Nature, Nature, vol. 533(7602), pages 251-254, May.
- Xiaoyu Liu & Chenfei Wang & Wenqiang Liu & Jingyi Li & Chong Li & Xiaochen Kou & Jiayu Chen & Yanhong Zhao & Haibo Gao & Hong Wang & Yong Zhang & Yawei Gao & Shaorong Gao, 2016. "Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos," Nature, Nature, vol. 537(7621), pages 558-562, September.
- Caryn S. Ross-Innes & Rory Stark & Andrew E. Teschendorff & Kelly A. Holmes & H. Raza Ali & Mark J. Dunning & Gordon D. Brown & Ondrej Gojis & Ian O. Ellis & Andrew R. Green & Simak Ali & Suet-Feung C, 2012. "Differential oestrogen receptor binding is associated with clinical outcome in breast cancer," Nature, Nature, vol. 481(7381), pages 389-393, January.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Mingyue Guo & Jinyi Wu & Chuanxin Chen & Xinggu Wang & An Gong & Wei Guan & Rowan M. Karvas & Kexin Wang & Mingwei Min & Yixuan Wang & Thorold W. Theunissen & Shaorong Gao & José C. R. Silva, 2024. "Self-renewing human naïve pluripotent stem cells dedifferentiate in 3D culture and form blastoids spontaneously," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
- Yueli Yang & Wenqi Jia & Zhiwei Luo & Yunpan Li & Hao Liu & Lixin Fu & Jinxiu Li & Yu Jiang & Junjian Lai & Haiwei Li & Babangida Jabir Saeed & Yi Zou & Yuan Lv & Liang Wu & Ting Zhou & Yongli Shan & , 2024. "VGLL1 cooperates with TEAD4 to control human trophectoderm lineage specification," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
- Julien Pontis & Cyril Pulver & Christopher J. Playfoot & Evarist Planet & Delphine Grun & Sandra Offner & Julien Duc & Andrea Manfrin & Matthias P. Lutolf & Didier Trono, 2022. "Primate-specific transposable elements shape transcriptional networks during human development," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
- Ariane Lismer & Sarah Kimmins, 2023. "Emerging evidence that the mammalian sperm epigenome serves as a template for embryo development," Nature Communications, Nature, vol. 14(1), pages 1-22, December.
- Yun-Wen Wu & Sen Li & Wei Zheng & Yan-Chu Li & Lu Chen & Yong Zhou & Zuo-Qi Deng & Ge Lin & Heng-Yu Fan & Qian-Qian Sha, 2022. "Dynamic mRNA degradome analyses indicate a role of histone H3K4 trimethylation in association with meiosis-coupled mRNA decay in oocyte aging," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
- Saurabh J. Pradhan & Puli Chandramouli Reddy & Michael Smutny & Ankita Sharma & Keisuke Sako & Meghana S. Oak & Rini Shah & Mrinmoy Pal & Ojas Deshpande & Greg Dsilva & Yin Tang & Rakesh Mishra & Giri, 2021. "Satb2 acts as a gatekeeper for major developmental transitions during early vertebrate embryogenesis," Nature Communications, Nature, vol. 12(1), pages 1-19, December.
- Joyce J. Thompson & Daniel J. Lee & Apratim Mitra & Sarah Frail & Ryan K. Dale & Pedro P. Rocha, 2022. "Extensive co-binding and rapid redistribution of NANOG and GATA6 during emergence of divergent lineages," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
- Moritz Binder & Raphael E. Szalat & Srikanth Talluri & Mariateresa Fulciniti & Hervé Avet-Loiseau & Giovanni Parmigiani & Mehmet K. Samur & Nikhil C. Munshi, 2024. "Bone marrow stromal cells induce chromatin remodeling in multiple myeloma cells leading to transcriptional changes," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Jiajun Tan & Yingfeng Li & Xiang Li & Xiaoxiao Zhu & Liping Liu & Hua Huang & Jiahua Wei & Hailing Wang & Yong Tian & Zhigao Wang & Zhuqiang Zhang & Bing Zhu, 2024. "Pramel15 facilitates zygotic nuclear DNMT1 degradation and DNA demethylation," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Aditya Kshirsagar & Svetlana Maslov Doroshev & Anna Gorelik & Tsviya Olender & Tamar Sapir & Daisuke Tsuboi & Irit Rosenhek-Goldian & Sergey Malitsky & Maxim Itkin & Amir Argoetti & Yael Mandel-Gutfre, 2023. "LIS1 RNA-binding orchestrates the mechanosensitive properties of embryonic stem cells in AGO2-dependent and independent ways," Nature Communications, Nature, vol. 14(1), pages 1-21, December.
- Takeshi Katsuda & Jonathan H. Sussman & Kenji Ito & Andrew Katznelson & Salina Yuan & Naomi Takenaka & Jinyang Li & Allyson J. Merrell & Hector Cure & Qinglan Li & Reyaz Ur Rasool & Irfan A. Asangani , 2024. "Cellular reprogramming in vivo initiated by SOX4 pioneer factor activity," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
- Jason Alexander Halliwell & Javier Martin-Gonzalez & Adnan Hashim & John Arne Dahl & Eva R. Hoffmann & Mads Lerdrup, 2024. "Sex-specific DNA-replication in the early mammalian embryo," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Yinuo Wang & Adel Elsherbiny & Linda Kessler & Julio Cordero & Haojie Shi & Heike Serke & Olga Lityagina & Felix A. Trogisch & Mona Malek Mohammadi & Ibrahim El-Battrawy & Johannes Backs & Thomas Wiel, 2022. "Lamin A/C-dependent chromatin architecture safeguards naïve pluripotency to prevent aberrant cardiovascular cell fate and function," Nature Communications, Nature, vol. 13(1), pages 1-24, December.
- Piaopiao Chen & Agnès H. Michel & Jianzhi Zhang, 2022. "Transposon insertional mutagenesis of diverse yeast strains suggests coordinated gene essentiality polymorphisms," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
- Natalie DeForest & Yuqi Wang & Zhiyi Zhu & Jacqueline S. Dron & Ryan Koesterer & Pradeep Natarajan & Jason Flannick & Tiffany Amariuta & Gina M. Peloso & Amit R. Majithia, 2024. "Genome-wide discovery and integrative genomic characterization of insulin resistance loci using serum triglycerides to HDL-cholesterol ratio as a proxy," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Liu Yang & San-Jian Yu & Qi Hong & Yu Yang & Zhi-Ming Shao, 2015. "Reduced Expression of TET1, TET2, TET3 and TDG mRNAs Are Associated with Poor Prognosis of Patients with Early Breast Cancer," PLOS ONE, Public Library of Science, vol. 10(7), pages 1-10, July.
- Marco D. Carpenter & Delaney K. Fischer & Shuo Zhang & Allison M. Bond & Kyle S. Czarnecki & Morgan T. Woolf & Hongjun Song & Elizabeth A. Heller, 2022. "Cell-type specific profiling of histone post-translational modifications in the adult mouse striatum," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
- Nickole Moon & Christopher P. Morgan & Ruth Marx-Rattner & Alyssa Jeng & Rachel L. Johnson & Ijeoma Chikezie & Carmen Mannella & Mary D. Sammel & C. Neill Epperson & Tracy L. Bale, 2024. "Stress increases sperm respiration and motility in mice and men," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
- Matvei Khoroshkin & Andrey Buyan & Martin Dodel & Albertas Navickas & Johnny Yu & Fathima Trejo & Anthony Doty & Rithvik Baratam & Shaopu Zhou & Sean B. Lee & Tanvi Joshi & Kristle Garcia & Benedict C, 2024. "Systematic identification of post-transcriptional regulatory modules," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
- Haofan Sun & Bin Fu & Xiaohong Qian & Ping Xu & Weijie Qin, 2024. "Nuclear and cytoplasmic specific RNA binding proteome enrichment and its changes upon ferroptosis induction," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42558-y. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.