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Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos

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  • Xiaoyu Liu

    (Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University
    Graduate School of Peking Union Medical College
    National Institute of Biological Sciences, NIBS)

  • Chenfei Wang

    (Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University)

  • Wenqiang Liu

    (Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University)

  • Jingyi Li

    (Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University)

  • Chong Li

    (Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University)

  • Xiaochen Kou

    (Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University)

  • Jiayu Chen

    (Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University)

  • Yanhong Zhao

    (Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University)

  • Haibo Gao

    (Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University
    National Institute of Biological Sciences, NIBS)

  • Hong Wang

    (Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University)

  • Yong Zhang

    (Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University)

  • Yawei Gao

    (Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University)

  • Shaorong Gao

    (Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University
    Graduate School of Peking Union Medical College
    National Institute of Biological Sciences, NIBS)

Abstract

Three papers in this issue of Nature use highly sensitive ChIP–seq assays to describe the dynamic patterns of histone modifications during early mouse embryogenesis, showing that oocytes have a distinctive epigenome and providing insights into how the maternal gene expression program transitions to the zygotic program.

Suggested Citation

  • Xiaoyu Liu & Chenfei Wang & Wenqiang Liu & Jingyi Li & Chong Li & Xiaochen Kou & Jiayu Chen & Yanhong Zhao & Haibo Gao & Hong Wang & Yong Zhang & Yawei Gao & Shaorong Gao, 2016. "Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos," Nature, Nature, vol. 537(7621), pages 558-562, September.
    • Handle: RePEc:nat:nature:v:537:y:2016:i:7621:d:10.1038_nature19362
    DOI: 10.1038/nature19362
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    Citations

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    Cited by:

    1. Natalia Benetti & Quentin Gouil & Andres Tapia del Fierro & Tamara Beck & Kelsey Breslin & Andrew Keniry & Edwina McGlinn & Marnie E. Blewitt, 2022. "Maternal SMCHD1 regulates Hox gene expression and patterning in the mouse embryo," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    2. Pedro L. Baldoni & Naim U. Rashid & Joseph G. Ibrahim, 2022. "Efficient detection and classification of epigenomic changes under multiple conditions," Biometrics, The International Biometric Society, vol. 78(3), pages 1141-1154, September.
    3. Jason Alexander Halliwell & Javier Martin-Gonzalez & Adnan Hashim & John Arne Dahl & Eva R. Hoffmann & Mads Lerdrup, 2024. "Sex-specific DNA-replication in the early mammalian embryo," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    4. Ariane Lismer & Sarah Kimmins, 2023. "Emerging evidence that the mammalian sperm epigenome serves as a template for embryo development," Nature Communications, Nature, vol. 14(1), pages 1-22, December.
    5. Yun-Wen Wu & Sen Li & Wei Zheng & Yan-Chu Li & Lu Chen & Yong Zhou & Zuo-Qi Deng & Ge Lin & Heng-Yu Fan & Qian-Qian Sha, 2022. "Dynamic mRNA degradome analyses indicate a role of histone H3K4 trimethylation in association with meiosis-coupled mRNA decay in oocyte aging," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    6. Marco D. Carpenter & Delaney K. Fischer & Shuo Zhang & Allison M. Bond & Kyle S. Czarnecki & Morgan T. Woolf & Hongjun Song & Elizabeth A. Heller, 2022. "Cell-type specific profiling of histone post-translational modifications in the adult mouse striatum," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    7. Nazifa Ahmed Moumi & Badhan Das & Zarin Tasnim Promi & Nishat Anjum Bristy & Md Shamsuzzoha Bayzid, 2019. "Quartet-based inference of cell differentiation trees from ChIP-Seq histone modification data," PLOS ONE, Public Library of Science, vol. 14(9), pages 1-25, September.
    8. Denis Torre & Nancy J. Francoeur & Yael Kalma & Ilana Gross Carmel & Betsaida S. Melo & Gintaras Deikus & Kimaada Allette & Ron Flohr & Maya Fridrikh & Konstantinos Vlachos & Kent Madrid & Hardik Shah, 2023. "Isoform-resolved transcriptome of the human preimplantation embryo," Nature Communications, Nature, vol. 14(1), pages 1-23, December.
    9. Hua Yu & Zhen Sun & Tianyu Tan & Hongru Pan & Jing Zhao & Ling Zhang & Jiayu Chen & Anhua Lei & Yuqing Zhu & Lang Chen & Yuyan Xu & Yaxin Liu & Ming Chen & Jinghao Sheng & Zhengping Xu & Pengxu Qian &, 2021. "rRNA biogenesis regulates mouse 2C-like state by 3D structure reorganization of peri-nucleolar heterochromatin," Nature Communications, Nature, vol. 12(1), pages 1-21, December.

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