Influenza A virus undergoes compartmentalized replication in vivo dominated by stochastic bottlenecks
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-022-31147-0
Download full text from publisher
References listed on IDEAS
- Mathilde Richard & Judith M. A. Brand & Theo M. Bestebroer & Pascal Lexmond & Dennis Meulder & Ron A. M. Fouchier & Anice C. Lowen & Sander Herfst, 2020. "Influenza A viruses are transmitted via the air from the nasal respiratory epithelium of ferrets," Nature Communications, Nature, vol. 11(1), pages 1-11, December.
- Andrew Rambaut & Oliver G. Pybus & Martha I. Nelson & Cecile Viboud & Jeffery K. Taubenberger & Edward C. Holmes, 2008. "The genomic and epidemiological dynamics of human influenza A virus," Nature, Nature, vol. 453(7195), pages 615-619, May.
- Masaki Imai & Tokiko Watanabe & Masato Hatta & Subash C. Das & Makoto Ozawa & Kyoko Shinya & Gongxun Zhong & Anthony Hanson & Hiroaki Katsura & Shinji Watanabe & Chengjun Li & Eiryo Kawakami & Shinya , 2012. "Experimental adaptation of an influenza H5 HA confers respiratory droplet transmission to a reassortant H5 HA/H1N1 virus in ferrets," Nature, Nature, vol. 486(7403), pages 420-428, June.
- Nathan T. Jacobs & Nina O. Onuoha & Alice Antia & John Steel & Rustom Antia & Anice C. Lowen, 2019. "Incomplete influenza A virus genomes occur frequently but are readily complemented during localized viral spread," Nature Communications, Nature, vol. 10(1), pages 1-17, December.
- Seema S. Lakdawala & Akila Jayaraman & Rebecca A. Halpin & Elaine W. Lamirande & Angela R. Shih & Timothy B. Stockwell & Xudong Lin & Ari Simenauer & Christopher T. Hanson & Leatrice Vogel & Myeisha P, 2015. "The soft palate is an important site of adaptation for transmissible influenza viruses," Nature, Nature, vol. 526(7571), pages 122-125, October.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Ketaki Ganti & Anish Bagga & Silvia Carnaccini & Lucas M. Ferreri & Ginger Geiger & C. Joaquin Caceres & Brittany Seibert & Yonghai Li & Liping Wang & Taeyong Kwon & Yuhao Li & Igor Morozov & Wenjun M, 2022. "Influenza A virus reassortment in mammals gives rise to genetically distinct within-host subpopulations," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
- Ahmed Kandeil & Christopher Patton & Jeremy C. Jones & Trushar Jeevan & Walter N. Harrington & Sanja Trifkovic & Jon P. Seiler & Thomas Fabrizio & Karlie Woodard & Jasmine C. Turner & Jeri-Carol Crump, 2023. "Rapid evolution of A(H5N1) influenza viruses after intercontinental spread to North America," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
- Kin Keung Lai & Ming Wang & Jiangze Du, 2019. "Modeling and Predicting Infectious Diseases Cases with Climatic Factors in Hong Kong," Biomedical Journal of Scientific & Technical Research, Biomedical Research Network+, LLC, vol. 23(1), pages 17147-17150, November.
- Neng Xia & Dongdong Jin & Chengfeng Pan & Jiachen Zhang & Zhengxin Yang & Lin Su & Jinsheng Zhao & Liu Wang & Li Zhang, 2022. "Dynamic morphological transformations in soft architected materials via buckling instability encoded heterogeneous magnetization," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
- Joseph A. Lewnard & Vennis Hong & Jeniffer S. Kim & Sally F. Shaw & Bruno Lewin & Harpreet Takhar & Marc Lipsitch & Sara Y. Tartof, 2023. "Increased vaccine sensitivity of an emerging SARS-CoV-2 variant," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
- Asher Leeks & Stuart A. West & Melanie Ghoul, 2021. "The evolution of cheating in viruses," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
- Kshitij Wagh & Aatish Bhatia & Benjamin D Greenbaum & Gyan Bhanot, 2014. "Bird to Human Transmission Biases and Vaccine Escape Mutants in H5N1 Infections," PLOS ONE, Public Library of Science, vol. 9(7), pages 1-10, July.
- Kucharski, Adam J. & Gog, Julia R., 2012. "Age profile of immunity to influenza: Effect of original antigenic sin," Theoretical Population Biology, Elsevier, vol. 81(2), pages 102-112.
- Good, Benjamin H. & Desai, Michael M., 2013. "Fluctuations in fitness distributions and the effects of weak linked selection on sequence evolution," Theoretical Population Biology, Elsevier, vol. 85(C), pages 86-102.
- Igor Balaz & Taichi Haruna, 2018. "Evolution Of Influenza A Nucleotide Segments Through The Lens Of Different Complexity Measures," Advances in Complex Systems (ACS), World Scientific Publishing Co. Pte. Ltd., vol. 21(05), pages 1-24, August.
- Oskar Staufer & Gösta Gantner & Ilia Platzman & Klaus Tanner & Imre Berger & Joachim P. Spatz, 2022. "Bottom-up assembly of viral replication cycles," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
- Simin Zou & Xuhui He, 2021. "Effect of Train-Induced Wind on the Transmission of COVID-19: A New Insight into Potential Infectious Risks," IJERPH, MDPI, vol. 18(15), pages 1-17, August.
- Xi-Ling Wang & Lin Yang & King-Pan Chan & Susan S Chiu & Kwok-Hung Chan & J S Malik Peiris & Chit-Ming Wong, 2012. "Model Selection in Time Series Studies of Influenza-Associated Mortality," PLOS ONE, Public Library of Science, vol. 7(6), pages 1-7, June.
- Mansour Ebrahimi & Parisa Aghagolzadeh & Narges Shamabadi & Ahmad Tahmasebi & Mohammed Alsharifi & David L Adelson & Farhid Hemmatzadeh & Esmaeil Ebrahimie, 2014. "Understanding the Underlying Mechanism of HA-Subtyping in the Level of Physic-Chemical Characteristics of Protein," PLOS ONE, Public Library of Science, vol. 9(5), pages 1-14, May.
- Mutsaers, Inge, 2015. "One-health approach as counter-measure against “autoimmune” responses in biosecurity," Social Science & Medicine, Elsevier, vol. 129(C), pages 123-130.
- Vijaykrishna Dhanasekaran & Sheena Sullivan & Kimberly M. Edwards & Ruopeng Xie & Arseniy Khvorov & Sophie A. Valkenburg & Benjamin J. Cowling & Ian G. Barr, 2022. "Human seasonal influenza under COVID-19 and the potential consequences of influenza lineage elimination," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
- David A Rasmussen & Oliver Ratmann & Katia Koelle, 2011. "Inference for Nonlinear Epidemiological Models Using Genealogies and Time Series," PLOS Computational Biology, Public Library of Science, vol. 7(8), pages 1-11, August.
- Laura Matrajt & M Elizabeth Halloran & Ira M Longini Jr, 2013. "Optimal Vaccine Allocation for the Early Mitigation of Pandemic Influenza," PLOS Computational Biology, Public Library of Science, vol. 9(3), pages 1-15, March.
- Valerie Le Sage & Nicole C. Rockey & Andrea J. French & Ryan McBride & Kevin R. McCarthy & Lora H. Rigatti & Meredith J. Shephard & Jennifer E. Jones & Sydney G. Walter & Joshua D. Doyle & Lingqing Xu, 2024. "Potential pandemic risk of circulating swine H1N2 influenza viruses," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Maud Thomas & Holger Rootzén, 2022. "Real‐time prediction of severe influenza epidemics using extreme value statistics," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 71(2), pages 376-394, March.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-31147-0. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.