IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v13y2022i1d10.1038_s41467-022-29633-6.html
   My bibliography  Save this article

CHD7 regulates bone-fat balance by suppressing PPAR-γ signaling

Author

Listed:
  • Caojie Liu

    (West China Hospital of Stomatology, Sichuan University)

  • Qiuchan Xiong

    (West China Hospital of Stomatology, Sichuan University)

  • Qiwen Li

    (West China Hospital of Stomatology, Sichuan University)

  • Weimin Lin

    (West China Hospital of Stomatology, Sichuan University)

  • Shuang Jiang

    (West China Hospital of Stomatology, Sichuan University)

  • Danting Zhang

    (West China Hospital of Stomatology, Sichuan University)

  • Yuan Wang

    (West China Hospital of Stomatology, Sichuan University)

  • Xiaobo Duan

    (West China Hospital of Stomatology, Sichuan University)

  • Ping Gong

    (West China Hospital of Stomatology, Sichuan University)

  • Ning Kang

    (West China Hospital of Stomatology, Sichuan University)

Abstract

Chromodomain helicase DNA-binding protein 7 (CHD7), an ATP-dependent eukaryotic chromatin remodeling enzyme, is essential for the development of organs. The mutation of CHD7 is the main cause of CHARGE syndrome, but its function and mechanism in skeletal system remain unclear. Here, we show conditional knockout of Chd7 in bone marrow mesenchymal stem cells (MSCs) and preosteoblasts leads to a pathological phenotype manifested as low bone mass and severely high marrow adiposity. Mechanistically, we identify enhancement of the peroxisome proliferator-activated receptor (PPAR) signaling in Chd7-deficient MSCs. Loss of Chd7 reduces the restriction of PPAR-γ and then PPAR-γ associates with trimethylated histone H3 at lysine 4 (H3K4me3), which subsequently activates the transcription of downstream adipogenic genes and disrupts the balance between osteogenic and adipogenic differentiation. Our data illustrate the pathological manifestations of Chd7 mutation in MSCs and reveal an epigenetic mechanism in skeletal health and diseases.

Suggested Citation

  • Caojie Liu & Qiuchan Xiong & Qiwen Li & Weimin Lin & Shuang Jiang & Danting Zhang & Yuan Wang & Xiaobo Duan & Ping Gong & Ning Kang, 2022. "CHD7 regulates bone-fat balance by suppressing PPAR-γ signaling," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-29633-6
    DOI: 10.1038/s41467-022-29633-6
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-022-29633-6
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-022-29633-6?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Gloria Jih & Nahid Iglesias & Mark A. Currie & Natarajan V. Bhanu & Joao A. Paulo & Steven P. Gygi & Benjamin A. Garcia & Danesh Moazed, 2017. "Unique roles for histone H3K9me states in RNAi and heritable silencing of transcription," Nature, Nature, vol. 547(7664), pages 463-467, July.
    2. Nick van Gastel & Steve Stegen & Guy Eelen & Sandra Schoors & Aurélie Carlier & Veerle W. Daniëls & Ninib Baryawno & Dariusz Przybylski & Maarten Depypere & Pieter-Jan Stiers & Dennis Lambrechts & Rie, 2020. "Lipid availability determines fate of skeletal progenitor cells via SOX9," Nature, Nature, vol. 579(7797), pages 111-117, March.
    3. Yunshu Wu & Liang Xie & Mengyuan Wang & Qiuchan Xiong & Yuchen Guo & Yu Liang & Jing Li & Rui Sheng & Peng Deng & Yuan Wang & Rixin Zheng & Yizhou Jiang & Ling Ye & Qianming Chen & Xuedong Zhou & Shui, 2018. "Mettl3-mediated m6A RNA methylation regulates the fate of bone marrow mesenchymal stem cells and osteoporosis," Nature Communications, Nature, vol. 9(1), pages 1-12, December.
    4. Daphne S. Cabianca & Celia Muñoz-Jiménez & Véronique Kalck & Dimos Gaidatzis & Jan Padeken & Andrew Seeber & Peter Askjaer & Susan M. Gasser, 2019. "Active chromatin marks drive spatial sequestration of heterochromatin in C. elegans nuclei," Nature, Nature, vol. 569(7758), pages 734-739, May.
    5. Magdalena B. Rother & Stefania Pellegrino & Rebecca Smith & Marco Gatti & Cornelia Meisenberg & Wouter W. Wiegant & Martijn S. Luijsterburg & Ralph Imhof & Jessica A. Downs & Alfred C. O. Vertegaal & , 2020. "CHD7 and 53BP1 regulate distinct pathways for the re-ligation of DNA double-strand breaks," Nature Communications, Nature, vol. 11(1), pages 1-19, December.
    6. Erin D. Pleasance & Philip J. Stephens & Sarah O’Meara & David J. McBride & Alison Meynert & David Jones & Meng-Lay Lin & David Beare & King Wai Lau & Chris Greenman & Ignacio Varela & Serena Nik-Zain, 2010. "A small-cell lung cancer genome with complex signatures of tobacco exposure," Nature, Nature, vol. 463(7278), pages 184-190, January.
    7. Ruby Yu & Xiaoyi Wang & Danesh Moazed, 2018. "Epigenetic inheritance mediated by coupling of RNAi and histone H3K9 methylation," Nature, Nature, vol. 558(7711), pages 615-619, June.
    8. Sito Torres-Garcia & Imtiyaz Yaseen & Manu Shukla & Pauline N. C. B. Audergon & Sharon A. White & Alison L. Pidoux & Robin C. Allshire, 2020. "Epigenetic gene silencing by heterochromatin primes fungal resistance," Nature, Nature, vol. 585(7825), pages 453-458, September.
    9. Ruchi Bajpai & Denise A. Chen & Alvaro Rada-Iglesias & Junmei Zhang & Yiqin Xiong & Jill Helms & Ching-Pin Chang & Yingming Zhao & Tomek Swigut & Joanna Wysocka, 2010. "CHD7 cooperates with PBAF to control multipotent neural crest formation," Nature, Nature, vol. 463(7283), pages 958-962, February.
    10. Yuan Wang & Peng Deng & Yuting Liu & Yunshu Wu & Yaqian Chen & Yuchen Guo & Shiwen Zhang & Xiaofei Zheng & Liyan Zhou & Weiqing Liu & Qiwen Li & Weimin Lin & Xingying Qi & Guomin Ou & Cunyu Wang & Qua, 2020. "Alpha-ketoglutarate ameliorates age-related osteoporosis via regulating histone methylations," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
    11. Gang G. Wang & Jikui Song & Zhanxin Wang & Holger L. Dormann & Fabio Casadio & Haitao Li & Jun-Li Luo & Dinshaw J. Patel & C. David Allis, 2009. "Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger," Nature, Nature, vol. 459(7248), pages 847-851, June.
    12. John F. Flanagan & Li-Zhi Mi & Maksymilian Chruszcz & Marcin Cymborowski & Katrina L. Clines & Youngchang Kim & Wladek Minor & Fraydoon Rastinejad & Sepideh Khorasanizadeh, 2005. "Double chromodomains cooperate to recognize the methylated histone H3 tail," Nature, Nature, vol. 438(7071), pages 1181-1185, December.
    13. Jeanine L. Van Nostrand & Colleen A. Brady & Heiyoun Jung & Daniel R. Fuentes & Margaret M. Kozak & Thomas M. Johnson & Chieh-Yu Lin & Chien-Jung Lin & Donald L. Swiderski & Hannes Vogel & Jonathan A., 2014. "Inappropriate p53 activation during development induces features of CHARGE syndrome," Nature, Nature, vol. 514(7521), pages 228-232, October.
    14. Weijun Feng & Daisuke Kawauchi & Huiqin Körkel-Qu & Huan Deng & Elisabeth Serger & Laura Sieber & Jenna Ariel Lieberman & Silvia Jimeno-González & Sander Lambo & Bola S. Hanna & Yassin Harim & Malin J, 2017. "Chd7 is indispensable for mammalian brain development through activation of a neuronal differentiation programme," Nature Communications, Nature, vol. 8(1), pages 1-14, April.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Fernando Rodriguez & Irina A. Yushenova & Daniel DiCorpo & Irina R. Arkhipova, 2022. "Bacterial N4-methylcytosine as an epigenetic mark in eukaryotic DNA," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    2. Xinhao Hou & Mingjing Xu & Chengming Zhu & Jianing Gao & Meili Li & Xiangyang Chen & Cheng Sun & Björn Nashan & Jianye Zang & Ying Zhou & Shouhong Guang & Xuezhu Feng, 2023. "Systematic characterization of chromodomain proteins reveals an H3K9me1/2 reader regulating aging in C. elegans," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
    3. Jenny Kaur Singh & Rebecca Smith & Magdalena B. Rother & Anton J. L. Groot & Wouter W. Wiegant & Kees Vreeken & Ostiane D’Augustin & Robbert Q. Kim & Haibin Qian & Przemek M. Krawczyk & Román González, 2021. "Zinc finger protein ZNF384 is an adaptor of Ku to DNA during classical non-homologous end-joining," Nature Communications, Nature, vol. 12(1), pages 1-21, December.
    4. Kate M. MacDonald & Shirony Nicholson-Puthenveedu & Maha M. Tageldein & Sarika Khasnis & Cheryl H. Arrowsmith & Shane M. Harding, 2023. "Antecedent chromatin organization determines cGAS recruitment to ruptured micronuclei," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    5. Tammy Liu & Gerd Melkus & Tim Ramsay & Adnan Sheikh & Odette Laneuville & Guy Trudel, 2023. "Bone marrow adiposity modulation after long duration spaceflight in astronauts," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    6. Jing Nie & Yoshitomo Ueda & Alexander J. Solivais & Eri Hashino, 2022. "CHD7 regulates otic lineage specification and hair cell differentiation in human inner ear organoids," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    7. Joke J F A van Vugt & Martijn de Jager & Magdalena Murawska & Alexander Brehm & John van Noort & Colin Logie, 2009. "Multiple Aspects of ATP-Dependent Nucleosome Translocation by RSC and Mi-2 Are Directed by the Underlying DNA Sequence," PLOS ONE, Public Library of Science, vol. 4(7), pages 1-14, July.
    8. Zhe Gong & Jinjin Zhu & Junxin Chen & Fan Feng & Haitao Zhang & Zheyuan Zhang & Chenxin Song & Kaiyu Liang & Shuhui Yang & Shunwu Fan & Xiangqian Fang & Shuying Shen, 2023. "CircRREB1 mediates lipid metabolism related senescent phenotypes in chondrocytes through FASN post-translational modifications," Nature Communications, Nature, vol. 14(1), pages 1-22, December.
    9. Guillermo Abascal-Palacios & Laura Jochem & Carlos Pla-Prats & Fabienne Beuron & Alessandro Vannini, 2021. "Structural basis of Ty3 retrotransposon integration at RNA Polymerase III-transcribed genes," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
    10. Ziad Ibrahim & Tao Wang & Olivier Destaing & Nicola Salvi & Naghmeh Hoghoughi & Clovis Chabert & Alexandra Rusu & Jinjun Gao & Leonardo Feletto & Nicolas Reynoird & Thomas Schalch & Yingming Zhao & Ma, 2022. "Structural insights into p300 regulation and acetylation-dependent genome organisation," Nature Communications, Nature, vol. 13(1), pages 1-23, December.
    11. Aaron Warren & Ryan M. Porter & Olivia Reyes-Castro & Md Mohsin Ali & Adriana Marques-Carvalho & Ha-Neui Kim & Landon B. Gatrell & Ernestina Schipani & Intawat Nookaew & Charles A. O’Brien & Roy Morel, 2023. "The NAD salvage pathway in mesenchymal cells is indispensable for skeletal development in mice," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    12. Yang Zhao & Jingyuan Ning & Hongqi Teng & Yalan Deng & Marisela Sheldon & Lei Shi & Consuelo Martinez & Jie Zhang & Annie Tian & Yutong Sun & Shinichi Nakagawa & Fan Yao & Hai Wang & Li Ma, 2024. "Long noncoding RNA Malat1 protects against osteoporosis and bone metastasis," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
    13. Corina Maritz & Reihaneh Khaleghi & Michelle N. Yancoskie & Sarah Diethelm & Sonja Brülisauer & Natalia Santos Ferreira & Yang Jiang & Shana J. Sturla & Hanspeter Naegeli, 2023. "ASH1L-MRG15 methyltransferase deposits H3K4me3 and FACT for damage verification in nucleotide excision repair," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    14. Yichen Zhong & Hakimeh Moghaddas Sani & Bishnu P. Paudel & Jason K. K. Low & Ana P. G. Silva & Stefan Mueller & Chandrika Deshpande & Santosh Panjikar & Xavier J. Reid & Max J. Bedward & Antoine M. Oi, 2022. "The role of auxiliary domains in modulating CHD4 activity suggests mechanistic commonality between enzyme families," Nature Communications, Nature, vol. 13(1), pages 1-17, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-29633-6. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.