A deep-learning approach for online cell identification and trace extraction in functional two-photon calcium imaging
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DOI: 10.1038/s41467-022-29180-0
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- Kenichi Ohki & Sooyoung Chung & Yeang H. Ch'ng & Prakash Kara & R. Clay Reid, 2005. "Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex," Nature, Nature, vol. 433(7026), pages 597-603, February.
- Luke E Rogerson & Zhijian Zhao & Katrin Franke & Thomas Euler & Philipp Berens, 2019. "Bayesian hypothesis testing and experimental design for two-photon imaging data," PLOS Computational Biology, Public Library of Science, vol. 15(8), pages 1-27, August.
- Benjamin F. Grewe & Jan Gründemann & Lacey J. Kitch & Jerome A. Lecoq & Jones G. Parker & Jesse D. Marshall & Margaret C. Larkin & Pablo E. Jercog & Francois Grenier & Jin Zhong Li & Andreas Lüthi & M, 2017. "Neural ensemble dynamics underlying a long-term associative memory," Nature, Nature, vol. 543(7647), pages 670-675, March.
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