IDEAS home Printed from https://ideas.repec.org/a/eee/phsmap/v642y2024ics0378437124002656.html
   My bibliography  Save this article

A mesoscale non-dimensional lattice Boltzmann model for self-sustained structures of swimming microbial suspensions

Author

Listed:
  • Su, Yan

Abstract

A new mesoscale two-phase flow non-dimensional lattice Boltzmann model (NDLBM) is developed for dynamical simulations of emergence and dispersion of self-sustained vortex and energy structures in microbial suspensions. Microbial fluids are treated as two-phase fluids with interaction forces between the biofluid phase and the base fluid phase, and the bioforces are based on transient local relative velocities. Microbial concentrations, sizes, shapes, densities, viscosities, surface tensions, active indexes, self repelling coefficients, and the nonlinear drag between the two phases are included in the present model. Base fluid properties and temperatures are also included. Both macroscopic and mesoscopic governing parameters are expressed with physical means for each coefficient. Compared to previous single-phase fluid mixture absolute velocity based models, the present two-phase fluid model based on the relative velocity shows faster convergence and more stable results. Parametric studies have been performed for intensities and group sizes of active flow structures in wide ranges of physical properties and governing parameters. Vorticity and energy structure patterns and scales are illustrated to show the underlying mechanism.

Suggested Citation

  • Su, Yan, 2024. "A mesoscale non-dimensional lattice Boltzmann model for self-sustained structures of swimming microbial suspensions," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 642(C).
    • Handle: RePEc:eee:phsmap:v:642:y:2024:i:c:s0378437124002656
    DOI: 10.1016/j.physa.2024.129756
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0378437124002656
    Download Restriction: Full text for ScienceDirect subscribers only. Journal offers the option of making the article available online on Science direct for a fee of $3,000
    File URL: https://libkey.io/10.1016/j.physa.2024.129756?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Yutaka Sumino & Ken H. Nagai & Yuji Shitaka & Dan Tanaka & Kenichi Yoshikawa & Hugues Chaté & Kazuhiro Oiwa, 2012. "Large-scale vortex lattice emerging from collectively moving microtubules," Nature, Nature, vol. 483(7390), pages 448-452, March.
    2. Tim Sanchez & Daniel T. N. Chen & Stephen J. DeCamp & Michael Heymann & Zvonimir Dogic, 2012. "Spontaneous motion in hierarchically assembled active matter," Nature, Nature, vol. 491(7424), pages 431-434, November.
    3. Ezzatneshan, Eslam & Vaseghnia, Hamed, 2020. "Evaluation of equations of state in multiphase lattice Boltzmann method with considering surface wettability effects," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 541(C).
    4. Sajjadi, H. & Amiri Delouei, A. & Sheikholeslami, M. & Atashafrooz, M. & Succi, S., 2019. "Simulation of three dimensional MHD natural convection using double MRT Lattice Boltzmann method," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 515(C), pages 474-496.
    5. Volker Schaller & Christoph Weber & Christine Semmrich & Erwin Frey & Andreas R. Bausch, 2010. "Polar patterns of driven filaments," Nature, Nature, vol. 467(7311), pages 73-77, September.
    6. Xia, Yuxian & Qiu, Xiang & Lou, Jianping & Qian, Yuehong, 2020. "Lattice Boltzmann Simulation for two-dimensional bacterial turbulence," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 555(C).
    7. Bettaibi, Soufiene & Kuznik, Frédéric & Sediki, Ezeddine, 2016. "Hybrid LBM-MRT model coupled with finite difference method for double-diffusive mixed convection in rectangular enclosure with insulated moving lid," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 444(C), pages 311-326.
    8. Javadzadegan, Ashkan & Joshaghani, Mohammad & Moshfegh, Abouzar & Akbari, Omid Ali & Afrouzi, Hamid Hassanzadeh & Toghraie, Davood, 2020. "Accurate meso-scale simulation of mixed convective heat transfer in a porous media for a vented square with hot elliptic obstacle: An LBM approach," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 537(C).
    9. Jourabian, Mahmoud & Rabienataj Darzi, A. Ali & Akbari, Omid Ali & Toghraie, Davood, 2020. "The enthalpy-based lattice Boltzmann method (LBM) for simulation of NePCM melting in inclined elliptical annulus," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 548(C).
    10. Martin James & Dominik Anton Suchla & Jörn Dunkel & Michael Wilczek, 2021. "Emergence and melting of active vortex crystals," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Maximilian Kurjahn & Leila Abbaspour & Franziska Papenfuß & Philip Bittihn & Ramin Golestanian & Benoît Mahault & Stefan Karpitschka, 2024. "Collective self-caging of active filaments in virtual confinement," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    2. Bo Zhang & Andreas Glatz & Igor S. Aranson & Alexey Snezhko, 2023. "Spontaneous shock waves in pulse-stimulated flocks of Quincke rollers," Nature Communications, Nature, vol. 14(1), pages 1-8, December.
    3. A. Tiribocchi & M. Durve & M. Lauricella & A. Montessori & D. Marenduzzo & S. Succi, 2023. "The crucial role of adhesion in the transmigration of active droplets through interstitial orifices," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    4. Nishkantha Arulkumaran & Mervyn Singer & Stefan Howorka & Jonathan R. Burns, 2023. "Creating complex protocells and prototissues using simple DNA building blocks," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    5. Kong, Decheng & Xue, Kai & Wang, Ping, 2024. "Collective queuing motion of self-propelled particles with leadership and experience," Applied Mathematics and Computation, Elsevier, vol. 476(C).
    6. Li, Chengwu & Zhao, Yuechao & Ai, Dihao & Wang, Qifei & Peng, Zhigao & Li, Yingjun, 2020. "Multi-component LBM-LES model of the air and methane flow in tunnels and its validation," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 553(C).
    7. Wei Ming Lim & Wei-Xiang Chew & Arianna Esposito Verza & Marion Pesenti & Andrea Musacchio & Thomas Surrey, 2024. "Regulation of minimal spindle midzone organization by mitotic kinases," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    8. Bibi Najma & Minu Varghese & Lev Tsidilkovski & Linnea Lemma & Aparna Baskaran & Guillaume Duclos, 2022. "Competing instabilities reveal how to rationally design and control active crosslinked gels," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    9. Salgado-García, R., 2022. "Active particles in reactive disordered media: How does adsorption affect diffusion?," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 603(C).
    10. Yin, Jianbao & Wang, Shisong & Hou, Xu & Wang, Zixian & Ye, Mengyan & Xing, Yuming, 2023. "Transient prediction model of finned tube energy storage system based on thermal network," Applied Energy, Elsevier, vol. 336(C).
    11. Shi, Hong-Da & Du, Lu-Chun & Huang, Fei-Jie & Guo, Wei, 2022. "Collective topological active particles: Non-ergodic superdiffusion and ageing in complex environments," Chaos, Solitons & Fractals, Elsevier, vol. 157(C).
    12. You, Feng & Yang, Han-Xin & Li, Yumeng & Du, Wenbo & Wang, Gang, 2023. "A modified Vicsek model based on the evolutionary game," Applied Mathematics and Computation, Elsevier, vol. 438(C).
    13. Reddy, M. Gnaneswara & Rani, M.V. V. N.L. Sudha & Kumar, K. Ganesh & Prasannakumar, B.C. & Chamkha, Ali J., 2020. "Cattaneo–Christov heat flux model on Blasius–Rayleigh–Stokes flow through a transitive magnetic field and Joule heating," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 548(C).
    14. Li, Zhixiong & Sheikholeslami, M. & Ayani, M. & Shamlooei, M. & Shafee, Ahmad & Waly, Mohamed Ibrahim & Tlili, I., 2019. "Acceleration of solidification process by means of nanoparticles in an energy storage enclosure using numerical approach," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 524(C), pages 540-552.
    15. Lioua Kolsi & Fatih Selimefendigil & Mohamed Omri & Hatem Rmili & Badreddine Ayadi & Chemseddine Maatki & Badr M. Alshammari, 2023. "CFD Study of MHD and Elastic Wall Effects on the Nanofluid Convection Inside a Ventilated Cavity Including Perforated Porous Object," Mathematics, MDPI, vol. 11(3), pages 1-21, January.
    16. Tom Brandstätter & David B. Brückner & Yu Long Han & Ricard Alert & Ming Guo & Chase P. Broedersz, 2023. "Curvature induces active velocity waves in rotating spherical tissues," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    17. Mallikarjun, Rahul & Pal, Arnab, 2023. "Chiral run-and-tumble walker: Transport and optimizing search," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 622(C).
    18. Antonio Lamura & Adriano Tiribocchi, 2021. "Shearing Effects on the Phase Coarsening of Binary Mixtures Using the Active Model B," Mathematics, MDPI, vol. 9(23), pages 1-13, November.
    19. López-Alamilla, N.J. & Challis, K.J. & Deaker, A.G. & Jack, M.W., 2023. "The effect of futile chemical cycles on chemical-to-mechanical energy conversion in interacting motor protein systems," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 615(C).
    20. Jourabian, Mahmoud & Rabienataj Darzi, A. Ali & Akbari, Omid Ali & Toghraie, Davood, 2020. "The enthalpy-based lattice Boltzmann method (LBM) for simulation of NePCM melting in inclined elliptical annulus," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 548(C).

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:phsmap:v:642:y:2024:i:c:s0378437124002656. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/physica-a-statistical-mechpplications/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.