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Energetics as common currency for integrating high resolution activity patterns into dynamic energy budget-individual based models

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  • Chimienti, Marianna
  • Desforges, Jean-Pierre
  • Beumer, Larissa T.
  • Nabe-Nielsen, Jacob
  • van Beest, Floris M.
  • Schmidt, Niels Martin

Abstract

Dynamic energy budget individual-based models (DEB-IBMs) provide a well-tested framework for modelling the acquisition and use of energy throughout the life cycle of organisms. These models are often developed using species-specific data to link behaviour and physiology and predict how individuals and populations perform in changing environments. Novel bio-logging technology, applied to free-ranging animals, provide detailed information about individual behavioural variations and responses to the environment. However, so far, no DEB-IBM has attempted to link and parameterise energy dynamics with the fine-scale activity data obtained by bio-logging to answer questions related to life history events in wild populations. The aim of this study is, therefore, to develop and test a DEB-IBM framework which integrates individuals behaviour obtained from high-resolution activity data. Our approach uses data collected with GPS and accelerometer tags attached to two muskox (Ovibos moschatus). The individuals had different fates: one survived the Arctic winter, while the other died. Applying hidden Markov models to accelerometer data, we quantified the variation in behavioural activity budgets (in stationary, feeding and transit) in relation to environmental conditions. We subsequently test how differences in time allocation affect fitness outcomes such as body mass, energy reserves and survival. The proportion of time spent feeding by each animal is used within the DEB-IBM framework to scale the functional response for food acquisition. Simulations using the seasonal feeding budget of the deceased individual lead to drastically reduced energy reserves and body weight during the Arctic winter, and to elevated probabilities of mortality by the end of winter. In contrast, simulations using the seasonal feeding pattern of the surviving muskox, result in much less pronounced losses in reserves and body weight, leading to negligible over-winter mortality. The framework we present here uses standardized modelling techniques, is applicable across species and can easily be extended to include other fitness measures or environmental stressors. Moreover, our framework provides the foundation needed for future studies to link individual movements, energetic processes, life history events and population dynamics in wildlife, which would open up possibilities to test how changing (future) environmental conditions influence animal decision-making and ultimately population level consequences.

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  • Chimienti, Marianna & Desforges, Jean-Pierre & Beumer, Larissa T. & Nabe-Nielsen, Jacob & van Beest, Floris M. & Schmidt, Niels Martin, 2020. "Energetics as common currency for integrating high resolution activity patterns into dynamic energy budget-individual based models," Ecological Modelling, Elsevier, vol. 434(C).
  • Handle: RePEc:eee:ecomod:v:434:y:2020:i:c:s0304380020303203
    DOI: 10.1016/j.ecolmodel.2020.109250
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    1. Esposito, S. & Incerti, G. & Giannino, F. & Russo, D. & Mazzoleni, S., 2010. "Integrated modelling of foraging behaviour, energy budget and memory properties," Ecological Modelling, Elsevier, vol. 221(9), pages 1283-1291.
    2. Desforges, Jean-Pierre & Marques, Gonçalo M. & Beumer, Larissa T. & Chimienti, Marianna & Blake, John & Rowell, Janice E. & Adamczewski, Jan & Schmidt, Niels Martin & van Beest, Floris M., 2019. "Quantification of the full lifecycle bioenergetics of a large mammal in the high Arctic," Ecological Modelling, Elsevier, vol. 401(C), pages 27-39.
    3. Merel Goedegebuure & Jessica Melbourne-Thomas & Stuart P Corney & Clive R McMahon & Mark A Hindell, 2018. "Modelling southern elephant seals Mirounga leonina using an individual-based model coupled with a dynamic energy budget," PLOS ONE, Public Library of Science, vol. 13(3), pages 1-37, March.
    4. Volker Grimm & Steven F. Railsback & Christian E. Vincenot & Uta Berger & Cara Gallagher & Donald L. DeAngelis & Bruce Edmonds & Jiaqi Ge & Jarl Giske & Jürgen Groeneveld & Alice S.A. Johnston & Alex, 2020. "The ODD Protocol for Describing Agent-Based and Other Simulation Models: A Second Update to Improve Clarity, Replication, and Structural Realism," Journal of Artificial Societies and Social Simulation, Journal of Artificial Societies and Social Simulation, vol. 23(2), pages 1-7.
    5. Boult, Victoria L. & Quaife, Tristan & Fishlock, Vicki & Moss, Cynthia J. & Lee, Phyllis C. & Sibly, Richard M., 2018. "Individual-based modelling of elephant population dynamics using remote sensing to estimate food availability," Ecological Modelling, Elsevier, vol. 387(C), pages 187-195.
    6. Vianey Leos-Barajas & Eric J. Gangloff & Timo Adam & Roland Langrock & Floris M. Beest & Jacob Nabe-Nielsen & Juan M. Morales, 2017. "Multi-scale Modeling of Animal Movement and General Behavior Data Using Hidden Markov Models with Hierarchical Structures," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 22(3), pages 232-248, September.
    7. Jennifer Pohle & Roland Langrock & Floris M. Beest & Niels Martin Schmidt, 2017. "Selecting the Number of States in Hidden Markov Models: Pragmatic Solutions Illustrated Using Animal Movement," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 22(3), pages 270-293, September.
    8. Avgar, Tal & Deardon, Rob & Fryxell, John M., 2013. "An empirically parameterized individual based model of animal movement, perception, and memory," Ecological Modelling, Elsevier, vol. 251(C), pages 158-172.
    9. Pethybridge, H. & Roos, D. & Loizeau, V. & Pecquerie, L. & Bacher, C., 2013. "Responses of European anchovy vital rates and population growth to environmental fluctuations: An individual-based modeling approach," Ecological Modelling, Elsevier, vol. 250(C), pages 370-383.
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    1. Malishev, Matthew & Kramer-Schadt, Stephanie, 2021. "Movement, models, and metabolism: Individual-based energy budget models as next-generation extensions for predicting animal movement outcomes across scales," Ecological Modelling, Elsevier, vol. 441(C).

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