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The effect of large sample sizes on ecological niche models: Analysis using a North American rodent, Peromyscus maniculatus

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  • Boria, Robert A.
  • Blois, Jessica L.

Abstract

Correlative ecological niche models (ENMs) aim to approximate the environmentally suitable areas for a species. Recently, studies have explored the minimum number of occurrence records needed to implement ENMs; however, cosmopolitan species with many occurrence records have their own challenges and the effects of larger sample sizes on ENM performance have yet to be determined. To address this issue, we focused on a New World rodent, Peromyscus maniculatus. We obtained locality data from GBIF (13,199 unique records), and spatially filtered the localities. We then modeled suitable area for the species using Maxent, two different environmental datasets (at different spatial resolutions) and different numbers of occurrence records (with 25 replicates per sample size). We evaluated the models with k-fold cross-validation, AUC, and two omission rates. Further, we calculated the variability among predictions within and between datasets to indicate variation in geography. Generally, the AUC and omission rate both decreased as sample size increased. Lastly, as sample size increased, similarities in geography increased within and between datasets. For P. maniculatus, we get similar performing models, both in terms of geographic predictions and evaluation statistics, with as few as 10%–20% of the maximum number of localities for each environmental dataset. Using a large number of occurrence records may not be necessary for ENMs, and in fact may hinder model performance.

Suggested Citation

  • Boria, Robert A. & Blois, Jessica L., 2018. "The effect of large sample sizes on ecological niche models: Analysis using a North American rodent, Peromyscus maniculatus," Ecological Modelling, Elsevier, vol. 386(C), pages 83-88.
  • Handle: RePEc:eee:ecomod:v:386:y:2018:i:c:p:83-88
    DOI: 10.1016/j.ecolmodel.2018.08.013
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    1. Barve, Narayani & Barve, Vijay & Jiménez-Valverde, Alberto & Lira-Noriega, Andrés & Maher, Sean P. & Peterson, A. Townsend & Soberón, Jorge & Villalobos, Fabricio, 2011. "The crucial role of the accessible area in ecological niche modeling and species distribution modeling," Ecological Modelling, Elsevier, vol. 222(11), pages 1810-1819.
    2. Boria, Robert A. & Olson, Link E. & Goodman, Steven M. & Anderson, Robert P., 2014. "Spatial filtering to reduce sampling bias can improve the performance of ecological niche models," Ecological Modelling, Elsevier, vol. 275(C), pages 73-77.
    3. Shcheglovitova, Mariya & Anderson, Robert P., 2013. "Estimating optimal complexity for ecological niche models: A jackknife approach for species with small sample sizes," Ecological Modelling, Elsevier, vol. 269(C), pages 9-17.
    4. VanDerWal, Jeremy & Shoo, Luke P. & Graham, Catherine & Williams, Stephen E., 2009. "Selecting pseudo-absence data for presence-only distribution modeling: How far should you stray from what you know?," Ecological Modelling, Elsevier, vol. 220(4), pages 589-594.
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    2. Barker, Justin R. & MacIsaac, Hugh J., 2022. "Species distribution models: Administrative boundary centroid occurrences require careful interpretation," Ecological Modelling, Elsevier, vol. 472(C).

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