Bayesian inference of mixed-effects ordinary differential equations models using heavy-tailed distributions
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DOI: 10.1016/j.csda.2019.03.001
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- Jiguo Cao & Gregor F. Fussmann & James O. Ramsay, 2008. "Estimating a Predator‐Prey Dynamical Model with the Parameter Cascades Method," Biometrics, The International Biometric Society, vol. 64(3), pages 959-967, September.
- Xinyu Zhang & Jiguo Cao & Raymond J. Carroll, 2015. "On the selection of ordinary differential equation models with application to predator-prey dynamical models," Biometrics, The International Biometric Society, vol. 71(1), pages 131-138, March.
- J. Guedj & R. Thiébaut & D. Commenges, 2007. "Maximum Likelihood Estimation in Dynamical Models of HIV," Biometrics, The International Biometric Society, vol. 63(4), pages 1198-1206, December.
- Peter Hall & Yanyuan Ma, 2014. "Quick and easy one-step parameter estimation in differential equations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 76(4), pages 735-748, September.
- Chen, Jianwei & Wu, Hulin, 2008. "Efficient Local Estimation for Time-Varying Coefficients in Deterministic Dynamic Models With Applications to HIV-1 Dynamics," Journal of the American Statistical Association, American Statistical Association, vol. 103, pages 369-384, March.
- Victor H. Lachos & Dipankar Bandyopadhyay & Dipak K. Dey, 2011. "Linear and Nonlinear Mixed-Effects Models for Censored HIV Viral Loads Using Normal/Independent Distributions," Biometrics, The International Biometric Society, vol. 67(4), pages 1594-1604, December.
- J. Cao & L. Wang & J. Xu, 2011. "Robust Estimation for Ordinary Differential Equation Models," Biometrics, The International Biometric Society, vol. 67(4), pages 1305-1313, December.
- David J. Spiegelhalter & Nicola G. Best & Bradley P. Carlin & Angelika Van Der Linde, 2002. "Bayesian measures of model complexity and fit," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(4), pages 583-639, October.
- G. J. M. Rosa & D. Gianola & C. R. Padovani, 2004. "Bayesian Longitudinal Data Analysis with Mixed Models and Thick-tailed Distributions using MCMC," Journal of Applied Statistics, Taylor & Francis Journals, vol. 31(7), pages 855-873.
- Aldo M. Garay & Victor H. Lachos & Heleno Bolfarine & Celso R. B. Cabral, 2017. "Linear censored regression models with scale mixtures of normal distributions," Statistical Papers, Springer, vol. 58(1), pages 247-278, March.
- Nicolas J-B. Brunel & Quentin Clairon & Florence d'Alché-Buc, 2014. "Parametric Estimation of Ordinary Differential Equations With Orthogonality Conditions," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(505), pages 173-185, March.
- S. Choy & A. Smith, 1997. "Hierarchical models with scale mixtures of normal distributions," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 6(1), pages 205-221, June.
- Yangxin Huang & Dacheng Liu & Hulin Wu, 2006. "Hierarchical Bayesian Methods for Estimation of Parameters in a Longitudinal HIV Dynamic System," Biometrics, The International Biometric Society, vol. 62(2), pages 413-423, June.
- Lang Li & Morton B. Brown & Kyung-Hoon Lee & Suneel Gupta, 2002. "Estimation and Inference for a Spline-Enhanced Population Pharmacokinetic Model," Biometrics, The International Biometric Society, vol. 58(3), pages 601-611, September.
- Liang, Hua & Wu, Hulin, 2008. "Parameter Estimation for Differential Equation Models Using a Framework of Measurement Error in Regression Models," Journal of the American Statistical Association, American Statistical Association, vol. 103(484), pages 1570-1583.
- Yangxin Huang & Hulin Wu, 2006. "A Bayesian approach for estimating antiviral efficacy in HIV dynamic models," Journal of Applied Statistics, Taylor & Francis Journals, vol. 33(2), pages 155-174.
- J. O. Ramsay & G. Hooker & D. Campbell & J. Cao, 2007. "Parameter estimation for differential equations: a generalized smoothing approach," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 69(5), pages 741-796, November.
- Cancho, Vicente G. & Dey, Dipak K. & Lachos, Victor H. & Andrade, Marinho G., 2011. "Bayesian nonlinear regression models with scale mixtures of skew-normal distributions: Estimation and case influence diagnostics," Computational Statistics & Data Analysis, Elsevier, vol. 55(1), pages 588-602, January.
- Alan S. Perelson & Avidan U. Neumann & Martin Markowitz & John M. Leonard & David D. Ho, 1996. "HIV-1 Dynamics In Vivo: Virion Clearance Rate, Infected Cell Lifespan, and Viral Generation Time," Working Papers 96-02-004, Santa Fe Institute.
- Hulin Wu & A. Adam Ding, 1999. "Population HIV-1 Dynamics In Vivo: Applicable Models and Inferential Tools for Virological Data from AIDS Clinical Trials," Biometrics, The International Biometric Society, vol. 55(2), pages 410-418, June.
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Keywords
Metropolis–Hastings; Outliers; Pharmacokinetics; Scale mixtures of multivariate normal distributions; Smoothing spline;All these keywords.
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