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A random forest model for forecasting regional COVID-19 cases utilizing reproduction number estimates and demographic data

Author

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  • Galasso, Joseph
  • Cao, Duy M.
  • Hochberg, Robert

Abstract

During the COVID-19 pandemic, predicting case spikes at the local level is important for a precise, targeted public health response and is generally done with compartmental models. The performance of compartmental models is highly dependent on the accuracy of their assumptions about disease dynamics within a population; thus, such models are susceptible to human error, unexpected events, or unknown characteristics of a novel infectious agent like COVID-19. We present a relatively non-parametric random forest model that forecasts the number of COVID-19 cases at the U.S. county level. Its most prioritized training features are derived from easily accessible, standard epidemiological data (i.e., regional test positivity rate) and the effective reproduction number (Rt) from compartmental models. A novel input training feature is case projections generated by aligning estimated effective reproduction number (pre-computed by COVIDActNow.org) with real time testing data until maximally correlated, helping our model fit better to the epidemic’s trajectory as ascertained by traditional models. Poor reliability of Rt is partially mitigated with dynamic population mobility and prevalence and mortality of non-COVID-19 diseases to gauge population disease susceptibility. The model was used to generate forecasts for 1, 2, 3, and 4 weeks into the future for each reference week within 11/01/2020 - 01/10/2021 for 3068 counties. Over this time period, it maintained a mean absolute error (MAE) of less than 300 weekly cases/100,000 and consistently outperformed or performed comparably with gold-standard compartmental models. Furthermore, it holds great potential in ensemble modeling due to its potential for a more expansive training feature set while maintaining good performance and limited resource utilization.

Suggested Citation

  • Galasso, Joseph & Cao, Duy M. & Hochberg, Robert, 2022. "A random forest model for forecasting regional COVID-19 cases utilizing reproduction number estimates and demographic data," Chaos, Solitons & Fractals, Elsevier, vol. 156(C).
    • Handle: RePEc:eee:chsofr:v:156:y:2022:i:c:s0960077921011334
    DOI: 10.1016/j.chaos.2021.111779
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    References listed on IDEAS

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    1. Shelby R. Buckman & Reuven Glick & Kevin J. Lansing & Nicolas Petrosky-Nadeau & Lily Seitelman, 2020. "Replicating and Projecting the Path of COVID-19 with a Model-Implied Reproduction Number," Working Paper Series 2020-24, Federal Reserve Bank of San Francisco.
    2. Ribeiro, Matheus Henrique Dal Molin & da Silva, Ramon Gomes & Mariani, Viviana Cocco & Coelho, Leandro dos Santos, 2020. "Short-term forecasting COVID-19 cumulative confirmed cases: Perspectives for Brazil," Chaos, Solitons & Fractals, Elsevier, vol. 135(C).
    3. Zeroual, Abdelhafid & Harrou, Fouzi & Dairi, Abdelkader & Sun, Ying, 2020. "Deep learning methods for forecasting COVID-19 time-Series data: A Comparative study," Chaos, Solitons & Fractals, Elsevier, vol. 140(C).
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