A Three Component Latent Class Model for Robust Semiparametric Gene Discovery
Author
Abstract
Suggested Citation
DOI: 10.2202/1544-6115.1565
Download full text from publisher
As the access to this document is restricted, you may want to search for a different version of it.
References listed on IDEAS
- Mark A. van de Wiel & Kyung In Kim, 2007. "Estimating the False Discovery Rate Using Nonparametric Deconvolution," Biometrics, The International Biometric Society, vol. 63(3), pages 806-815, September.
- Alfo, Marco & Farcomeni, Alessio & Tardella, Luca, 2007. "Robust semiparametric mixing for detecting differentially expressed genes in microarray experiments," Computational Statistics & Data Analysis, Elsevier, vol. 51(11), pages 5253-5265, July.
- Lewin Alex & Bochkina Natalia & Richardson Sylvia, 2007. "Fully Bayesian Mixture Model for Differential Gene Expression: Simulations and Model Checks," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 6(1), pages 1-28, December.
- Ingrassia, Salvatore & Rocci, Roberto, 2007. "Constrained monotone EM algorithms for finite mixture of multivariate Gaussians," Computational Statistics & Data Analysis, Elsevier, vol. 51(11), pages 5339-5351, July.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Farcomeni Alessio & Arima Serena, 2012. "A Bayesian autoregressive three-state hidden Markov model for identifying switching monotonic regimes in Microarray time course data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 11(4), pages 1-31, June.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Roberto Rocci & Stefano Antonio Gattone & Roberto Di Mari, 2018. "A data driven equivariant approach to constrained Gaussian mixture modeling," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 12(2), pages 235-260, June.
- Xu Gao & Weining Shen & Liwen Zhang & Jianhua Hu & Norbert J. Fortin & Ron D. Frostig & Hernando Ombao, 2021. "Regularized matrix data clustering and its application to image analysis," Biometrics, The International Biometric Society, vol. 77(3), pages 890-902, September.
- L. García-Escudero & A. Gordaliza & A. Mayo-Iscar, 2013. "Comments on: model-based clustering and classification with non-normal mixture distributions," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 22(4), pages 459-461, November.
- Roberto Mari & Roberto Rocci & Stefano Antonio Gattone, 2020. "Scale-constrained approaches for maximum likelihood estimation and model selection of clusterwise linear regression models," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 29(1), pages 49-78, March.
- Salvatore Ingrassia & Simona Minotti & Giorgio Vittadini, 2012.
"Local Statistical Modeling via a Cluster-Weighted Approach with Elliptical Distributions,"
Journal of Classification, Springer;The Classification Society, vol. 29(3), pages 363-401, October.
- Salvatore Ingrassia & Simona Caterina Minotti & Giorgio Vittadini, 2011. "Local Statistical Modeling via Cluster-Weighted Approach with Elliptical Distributions," Working Papers 20111001, Università degli Studi di Milano-Bicocca, Dipartimento di Statistica.
- Volodymyr Melnykov, 2013. "Finite mixture modelling in mass spectrometry analysis," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 62(4), pages 573-592, August.
- Seo, Byungtae & Kim, Daeyoung, 2012. "Root selection in normal mixture models," Computational Statistics & Data Analysis, Elsevier, vol. 56(8), pages 2454-2470.
- Vinícius Diniz Mayrink & Flávio Bambirra Gonçalves, 2017. "A Bayesian hidden Markov mixture model to detect overexpressed chromosome regions," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 66(2), pages 387-412, February.
- J. Andrés Christen & Bruno Sansó & Mario Santana-Cibrian & Jorge X. Velasco-Hernández, 2016. "Bayesian deconvolution of oil well test data using Gaussian processes," Journal of Applied Statistics, Taylor & Francis Journals, vol. 43(4), pages 721-737, March.
- L. García-Escudero & A. Gordaliza & A. Mayo-Iscar, 2014. "A constrained robust proposal for mixture modeling avoiding spurious solutions," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 8(1), pages 27-43, March.
- Andrews, Jeffrey L., 2018. "Addressing overfitting and underfitting in Gaussian model-based clustering," Computational Statistics & Data Analysis, Elsevier, vol. 127(C), pages 160-171.
- Montazeri Zahra & Yanofsky Corey M. & Bickel David R., 2010. "Shrinkage Estimation of Effect Sizes as an Alternative to Hypothesis Testing Followed by Estimation in High-Dimensional Biology: Applications to Differential Gene Expression," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-33, June.
- Antonio Punzo & Salvatore Ingrassia & Antonello Maruotti, 2021. "Multivariate hidden Markov regression models: random covariates and heavy-tailed distributions," Statistical Papers, Springer, vol. 62(3), pages 1519-1555, June.
- Chi, Eric C. & Lange, Kenneth, 2014. "Stable estimation of a covariance matrix guided by nuclear norm penalties," Computational Statistics & Data Analysis, Elsevier, vol. 80(C), pages 117-128.
- Ingrassia, Salvatore & Rocci, Roberto, 2011. "Degeneracy of the EM algorithm for the MLE of multivariate Gaussian mixtures and dynamic constraints," Computational Statistics & Data Analysis, Elsevier, vol. 55(4), pages 1715-1725, April.
- Antonello Maruotti & Antonio Punzo, 2021. "Initialization of Hidden Markov and Semi‐Markov Models: A Critical Evaluation of Several Strategies," International Statistical Review, International Statistical Institute, vol. 89(3), pages 447-480, December.
- Seo, Byungtae & Lindsay, Bruce G., 2010. "A computational strategy for doubly smoothed MLE exemplified in the normal mixture model," Computational Statistics & Data Analysis, Elsevier, vol. 54(8), pages 1930-1941, August.
- Lloyd-Jones, Luke R. & Nguyen, Hien D. & McLachlan, Geoffrey J., 2018. "A globally convergent algorithm for lasso-penalized mixture of linear regression models," Computational Statistics & Data Analysis, Elsevier, vol. 119(C), pages 19-38.
- Pietro Coretto & Christian Hennig, 2016. "Robust Improper Maximum Likelihood: Tuning, Computation, and a Comparison With Other Methods for Robust Gaussian Clustering," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(516), pages 1648-1659, October.
- Paul D. McNicholas, 2016. "Model-Based Clustering," Journal of Classification, Springer;The Classification Society, vol. 33(3), pages 331-373, October.
More about this item
Keywords
differentially expressed genes; effect size; microarray data; mixture model;All these keywords.
Statistics
Access and download statisticsCorrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:bpj:sagmbi:v:10:y:2011:i:1:n:7. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Peter Golla (email available below). General contact details of provider: https://www.degruyter.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.