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Functional cartography of complex metabolic networks

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Cited by:

  1. Beiró, Mariano G. & Busch, Jorge R. & Grynberg, Sebastian P. & Alvarez-Hamelin, J. Ignacio, 2013. "Obtaining communities with a fitness growth process," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 392(9), pages 2278-2293.
  2. Yang, Yitao & Jia, Bin & Yan, Xiao-Yong & Zhi, Danyue & Song, Dongdong & Chen, Yan & de Bok, Michiel & Tavasszy, Lóránt A. & Gao, Ziyou, 2023. "Uncovering and modeling the hierarchical organization of urban heavy truck flows," Transportation Research Part E: Logistics and Transportation Review, Elsevier, vol. 179(C).
  3. Minchao Wang & Wu Zhang & Wang Ding & Dongbo Dai & Huiran Zhang & Hao Xie & Luonan Chen & Yike Guo & Jiang Xie, 2014. "Parallel Clustering Algorithm for Large-Scale Biological Data Sets," PLOS ONE, Public Library of Science, vol. 9(4), pages 1-9, April.
  4. Yau-Hua Yu & Hsu-Ko Kuo & Kuo-Wei Chang, 2008. "The Evolving Transcriptome of Head and Neck Squamous Cell Carcinoma: A Systematic Review," PLOS ONE, Public Library of Science, vol. 3(9), pages 1-11, September.
  5. Tinic, Murat & Sensoy, Ahmet & Demir, Muge & Nguyen, Duc Khuong, 2020. "Broker Network Connectivity and the Cross-Section of Expected Stock Returns," MPRA Paper 104719, University Library of Munich, Germany.
  6. Wang, Lin & Li, Jia & Wang, Ting & Liao, Jinbao, 2023. "A positive complexity-stability relationship emerges in pollinator-plant-consumer tripartite networks disturbed by plant invasion," Ecological Modelling, Elsevier, vol. 484(C).
  7. Xue Wen & Delong Zhang & Bishan Liang & Ruibin Zhang & Zengjian Wang & Junjing Wang & Ming Liu & Ruiwang Huang, 2015. "Reconfiguration of the Brain Functional Network Associated with Visual Task Demands," PLOS ONE, Public Library of Science, vol. 10(7), pages 1-16, July.
  8. Ning Ling & Tingting Wang & Yakov Kuzyakov, 2022. "Rhizosphere bacteriome structure and functions," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
  9. Attila Mester & Andrei Pop & Bogdan-Eduard-Mădălin Mursa & Horea Greblă & Laura Dioşan & Camelia Chira, 2021. "Network Analysis Based on Important Node Selection and Community Detection," Mathematics, MDPI, vol. 9(18), pages 1-16, September.
  10. Christian F A Negre & Hayato Ushijima-Mwesigwa & Susan M Mniszewski, 2020. "Detecting multiple communities using quantum annealing on the D-Wave system," PLOS ONE, Public Library of Science, vol. 15(2), pages 1-14, February.
  11. Jiansheng Cai & Wencong Li & Xiaodong Zhang & Jihui Wang, 2024. "New Random Walk Algorithm Based on Different Seed Nodes for Community Detection," Mathematics, MDPI, vol. 12(15), pages 1-21, July.
  12. Wu, Jiaxin & Lu, Jing & Zhang, Lingye & Fan, Hanwen, 2024. "Spatial heterogeneity among different-sized port communities in directed-weighted global liner shipping network," Journal of Transport Geography, Elsevier, vol. 114(C).
  13. Manikandan Narayanan & Adrian Vetta & Eric E Schadt & Jun Zhu, 2010. "Simultaneous Clustering of Multiple Gene Expression and Physical Interaction Datasets," PLOS Computational Biology, Public Library of Science, vol. 6(4), pages 1-13, April.
  14. Morton E. O’Kelly & Yongha Park, 2023. "Contrasts in Sustainability between Hub-Based and Point-to-Point Airline Networks," Sustainability, MDPI, vol. 15(20), pages 1-17, October.
  15. Bai, Xiwen & Ma, Zhongjun & Zhou, Yaoming, 2023. "Data-driven static and dynamic resilience assessment of the global liner shipping network," Transportation Research Part E: Logistics and Transportation Review, Elsevier, vol. 170(C).
  16. Nicholas S. Vonortas & Koichiro Okamura, 2013. "Network structure and robustness: lessons for research programme design," Economics of Innovation and New Technology, Taylor & Francis Journals, vol. 22(4), pages 392-411, June.
  17. Franz Kaiser & Philipp C. Böttcher & Henrik Ronellenfitsch & Vito Latora & Dirk Witthaut, 2022. "Dual communities in spatial networks," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
  18. Shen, Xin & Han, Yue & Li, Wenqian & Wong, Ka-Chun & Peng, Chengbin, 2021. "Finding core–periphery structures in large networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 581(C).
  19. Serguei Saavedra & Jordi Duch & Brian Uzzi, 2011. "Tracking Traders' Understanding of the Market Using e-Communication Data," PLOS ONE, Public Library of Science, vol. 6(10), pages 1-7, October.
  20. Stefan Pinkert & Jörg Schultz & Jörg Reichardt, 2010. "Protein Interaction Networks—More Than Mere Modules," PLOS Computational Biology, Public Library of Science, vol. 6(1), pages 1-13, January.
  21. Helena Osterholz & Stephanie Turner & Linda J. Alakangas & Eva-Lena Tullborg & Thorsten Dittmar & Birgitta E. Kalinowski & Mark Dopson, 2022. "Terrigenous dissolved organic matter persists in the energy-limited deep groundwaters of the Fennoscandian Shield," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
  22. Ursula A. Tooley & Aidan Latham & Jeanette K. Kenley & Dimitrios Alexopoulos & Tara A. Smyser & Ashley N. Nielsen & Lisa Gorham & Barbara B. Warner & Joshua S. Shimony & Jeffrey J. Neil & Joan L. Luby, 2024. "Prenatal environment is associated with the pace of cortical network development over the first three years of life," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
  23. Howard Muchen Hsu & Zai-Fu Yao & Kai Hwang & Shulan Hsieh, 2020. "Between-module functional connectivity of the salient ventral attention network and dorsal attention network is associated with motor inhibition," PLOS ONE, Public Library of Science, vol. 15(12), pages 1-15, December.
  24. Wang, Mingyan & Zeng, An & Cui, Xiaohua, 2022. "Collective user switching behavior reveals the influence of TV channels and their hidden community structure," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 606(C).
  25. Leto Peel & Tiago P. Peixoto & Manlio De Domenico, 2022. "Statistical inference links data and theory in network science," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
  26. Du, Yuxian & Lin, Xi & Pan, Ye & Chen, Zhaoxin & Xia, Huan & Luo, Qian, 2023. "Identifying influential airports in airline network based on failure risk factors with TOPSIS," Chaos, Solitons & Fractals, Elsevier, vol. 169(C).
  27. Ayelet M. Rosenberg & Manish Saggar & Anna S. Monzel & Jack Devine & Peter Rogu & Aaron Limoges & Alex Junker & Carmen Sandi & Eugene V. Mosharov & Dani Dumitriu & Christoph Anacker & Martin Picard, 2023. "Brain mitochondrial diversity and network organization predict anxiety-like behavior in male mice," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
  28. Chen-Kun Tsung & Sing-Ling Lee & Hann-Jang Ho & ShengKai Chou, 2021. "A modularity-maximization-based approach for detecting multi-communities in social networks," Annals of Operations Research, Springer, vol. 303(1), pages 381-411, August.
  29. Feng, Xiao & He, Shiwei & Li, Guangye & Chi, Jushang, 2021. "Transfer network of high-speed rail and aviation: Structure and critical components," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 581(C).
  30. Sukeda, Issey & Miyauchi, Atsushi & Takeda, Akiko, 2023. "A study on modularity density maximization: Column generation acceleration and computational complexity analysis," European Journal of Operational Research, Elsevier, vol. 309(2), pages 516-528.
  31. Inmaculada Gutiérrez & Juan Antonio Guevara & Daniel Gómez & Javier Castro & Rosa Espínola, 2021. "Community Detection Problem Based on Polarization Measures: An Application to Twitter: The COVID-19 Case in Spain," Mathematics, MDPI, vol. 9(4), pages 1-27, February.
  32. Shuqi Qin & Dianye Zhang & Bin Wei & Yuanhe Yang, 2024. "Dual roles of microbes in mediating soil carbon dynamics in response to warming," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
  33. Milena Oehlers & Benjamin Fabian, 2021. "Graph Metrics for Network Robustness—A Survey," Mathematics, MDPI, vol. 9(8), pages 1-48, April.
  34. Carlos Garcia, 2016. "BoCluSt: Bootstrap Clustering Stability Algorithm for Community Detection," PLOS ONE, Public Library of Science, vol. 11(6), pages 1-15, June.
  35. Zhang, Yuerong & Marshall, Stephen & Manley, Ed, 2021. "Understanding the roles of rail stations: Insights from network approaches in the London metropolitan area," Journal of Transport Geography, Elsevier, vol. 94(C).
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