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BoCluSt: Bootstrap Clustering Stability Algorithm for Community Detection

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  • Carlos Garcia

Abstract

The identification of modules or communities in sets of related variables is a key step in the analysis and modeling of biological systems. Procedures for this identification are usually designed to allow fast analyses of very large datasets and may produce suboptimal results when these sets are of a small to moderate size. This article introduces BoCluSt, a new, somewhat more computationally intensive, community detection procedure that is based on combining a clustering algorithm with a measure of stability under bootstrap resampling. Both computer simulation and analyses of experimental data showed that BoCluSt can outperform current procedures in the identification of multiple modules in data sets with a moderate number of variables. In addition, the procedure provides users with a null distribution of results to evaluate the support for the existence of community structure in the data. BoCluSt takes individual measures for a set of variables as input, and may be a valuable and robust exploratory tool of network analysis, as it provides 1) an estimation of the best partition of variables into modules, 2) a measure of the support for the existence of modular structures, and 3) an overall description of the whole structure, which may reveal hierarchical modular situations, in which modules are composed of smaller sub-modules.

Suggested Citation

  • Carlos Garcia, 2016. "BoCluSt: Bootstrap Clustering Stability Algorithm for Community Detection," PLOS ONE, Public Library of Science, vol. 11(6), pages 1-15, June.
  • Handle: RePEc:plo:pone00:0156576
    DOI: 10.1371/journal.pone.0156576
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    1. Carmelo Fruciano & Paolo Franchini & Axel Meyer, 2013. "Resampling-Based Approaches to Study Variation in Morphological Modularity," PLOS ONE, Public Library of Science, vol. 8(7), pages 1-8, July.
    2. Roger Guimerà & Luís A. Nunes Amaral, 2005. "Functional cartography of complex metabolic networks," Nature, Nature, vol. 433(7028), pages 895-900, February.
    3. Yong-Yeol Ahn & James P. Bagrow & Sune Lehmann, 2010. "Link communities reveal multiscale complexity in networks," Nature, Nature, vol. 466(7307), pages 761-764, August.
    4. Mark S. Handcock & Adrian E. Raftery & Jeremy M. Tantrum, 2007. "Model‐based clustering for social networks," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 170(2), pages 301-354, March.
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    Cited by:

    1. Mayra Z Rodriguez & Cesar H Comin & Dalcimar Casanova & Odemir M Bruno & Diego R Amancio & Luciano da F Costa & Francisco A Rodrigues, 2019. "Clustering algorithms: A comparative approach," PLOS ONE, Public Library of Science, vol. 14(1), pages 1-34, January.

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