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Rhizosphere bacteriome structure and functions

Author

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  • Ning Ling

    (Lanzhou University
    Nanjing Agricultural University)

  • Tingting Wang

    (Nanjing Agricultural University)

  • Yakov Kuzyakov

    (University of Goettingen
    Peoples Friendship University of Russia (RUDN University))

Abstract

Microbial composition and functions in the rhizosphere—an important microbial hotspot—are among the most fascinating yet elusive topics in microbial ecology. We used 557 pairs of published 16S rDNA amplicon sequences from the bulk soils and rhizosphere in different ecosystems around the world to generalize bacterial characteristics with respect to community diversity, composition, and functions. The rhizosphere selects microorganisms from bulk soil to function as a seed bank, reducing microbial diversity. The rhizosphere is enriched in Bacteroidetes, Proteobacteria, and other copiotrophs. Highly modular but unstable bacterial networks in the rhizosphere (common for r-strategists) reflect the interactions and adaptations of microorganisms to dynamic conditions. Dormancy strategies in the rhizosphere are dominated by toxin–antitoxin systems, while sporulation is common in bulk soils. Functional predictions showed that genes involved in organic compound conversion, nitrogen fixation, and denitrification were strongly enriched in the rhizosphere (11–182%), while genes involved in nitrification were strongly depleted.

Suggested Citation

  • Ning Ling & Tingting Wang & Yakov Kuzyakov, 2022. "Rhizosphere bacteriome structure and functions," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-28448-9
    DOI: 10.1038/s41467-022-28448-9
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    5. Jiahui Lin & Hengyi Dai & Jing Yuan & Caixian Tang & Bin Ma & Jianming Xu, 2024. "Arsenic-induced enhancement of diazotrophic recruitment and nitrogen fixation in Pteris vittata rhizosphere," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    6. Hongmei Song & Zixuan Chang & Xuan Hu & Yan Li & Chengjiao Duan & Lifan Yang & Haoying Wang & Tingliang Li, 2024. "Combined Application of Chemical and Organic Fertilizers Promoted Soil Carbon Sequestration and Bacterial Community Diversity in Dryland Wheat Fields," Land, MDPI, vol. 13(8), pages 1-18, August.
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    10. Wenqiang Wang & Wenxiao Wang & Shuang Yu & Hongmei Zhang & Junlong Yang & Xiaowei Li, 2024. "Structural Characteristics and Driving Factors of Rhizosphere Microbial Communities in the Rhizosphere of Six Stipa Species Across the Ningxia Steppe," Sustainability, MDPI, vol. 16(23), pages 1-19, November.
    11. Tian, Lixin & Yang, Yu & Song, Youhong & Feng, Baili, 2024. "Rehydration under extreme drought conditions affected rhizosphere microorganisms more than bulk soil in broomcorn millet farmland," Agricultural Water Management, Elsevier, vol. 295(C).
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