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Gene expression profiling predicts clinical outcome of breast cancer

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Cited by:

  1. Haixiang Zhang & Jian Huang & Liuquan Sun, 2022. "Projection‐based and cross‐validated estimation in high‐dimensional Cox model," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 49(1), pages 353-372, March.
  2. Lingsong Meng & Dorina Avram & George Tseng & Zhiguang Huo, 2022. "Outcome‐guided sparse K‐means for disease subtype discovery via integrating phenotypic data with high‐dimensional transcriptomic data," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 71(2), pages 352-375, March.
  3. M. R. Guarracino & S. Cuciniello & P. M. Pardalos, 2009. "Classification and Characterization of Gene Expression Data with Generalized Eigenvalues," Journal of Optimization Theory and Applications, Springer, vol. 141(3), pages 533-545, June.
  4. Garrett Green & Ruben Carmona & Kaveh Zakeri & Chih-Han Lee & Saif Borgan & Zaid Marhoon & Andrew Sharabi & Loren K Mell, 2016. "Specificity of Genetic Biomarker Studies in Cancer Research: A Systematic Review," PLOS ONE, Public Library of Science, vol. 11(7), pages 1-7, July.
  5. Guan-Hua Huang & Su-Mei Wang & Chung-Chu Hsu, 2011. "Optimization-Based Model Fitting for Latent Class and Latent Profile Analyses," Psychometrika, Springer;The Psychometric Society, vol. 76(4), pages 584-611, October.
  6. Kosuke Yoshihara & Atsushi Tajima & Tetsuro Yahata & Shoji Kodama & Hiroyuki Fujiwara & Mitsuaki Suzuki & Yoshitaka Onishi & Masayuki Hatae & Kazunobu Sueyoshi & Hisaya Fujiwara & Yoshiki Kudo & Kohei, 2010. "Gene Expression Profile for Predicting Survival in Advanced-Stage Serous Ovarian Cancer Across Two Independent Datasets," PLOS ONE, Public Library of Science, vol. 5(3), pages 1-13, March.
  7. Mark Kidd & Ignat A Drozdov & Somer Matar & Nicole Gurunlian & Nicholas J Ferranti & Anna Malczewska & Philip Bennett & Lisa Bodei & Irvin M Modlin, 2019. "Utility of a ready-to-use PCR system for neuroendocrine tumor diagnosis," PLOS ONE, Public Library of Science, vol. 14(6), pages 1-18, June.
  8. Tibshirani Robert J., 2009. "Univariate Shrinkage in the Cox Model for High Dimensional Data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 8(1), pages 1-20, April.
  9. Koch, Inge & Naito, Kanta, 2010. "Prediction of multivariate responses with a selected number of principal components," Computational Statistics & Data Analysis, Elsevier, vol. 54(7), pages 1791-1807, July.
  10. Jing Zhang & Qihua Wang & Xuan Wang, 2022. "Surrogate-variable-based model-free feature screening for survival data under the general censoring mechanism," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 74(2), pages 379-397, April.
  11. Enrique Espinosa & Iker Sánchez-Navarro & Angelo Gámez-Pozo & Álvaro Pinto Marin & David Hardisson & Rosario Madero & Andrés Redondo & Pilar Zamora & Belén San José Valiente & Marta Mendiola & Manuel , 2009. "Comparison of Prognostic Gene Profiles Using qRT-PCR in Paraffin Samples: A Retrospective Study in Patients with Early Breast Cancer," PLOS ONE, Public Library of Science, vol. 4(6), pages 1-9, June.
  12. Gaorong Li & Liugen Xue & Heng Lian, 2012. "SCAD-penalised generalised additive models with non-polynomial dimensionality," Journal of Nonparametric Statistics, Taylor & Francis Journals, vol. 24(3), pages 681-697.
  13. Zemin Zheng & Jie Zhang & Yang Li, 2022. "L 0 -Regularized Learning for High-Dimensional Additive Hazards Regression," INFORMS Journal on Computing, INFORMS, vol. 34(5), pages 2762-2775, September.
  14. Sijia Huang & Cameron Yee & Travers Ching & Herbert Yu & Lana X Garmire, 2014. "A Novel Model to Combine Clinical and Pathway-Based Transcriptomic Information for the Prognosis Prediction of Breast Cancer," PLOS Computational Biology, Public Library of Science, vol. 10(9), pages 1-15, September.
  15. Ahdesmäki Miika & Lancashire Lee & Proutski Vitali & Wilson Claire & Davison Timothy S. & Harkin D. Paul & Kennedy Richard D., 2013. "Model selection for prognostic time-to-event gene signature discovery with applications in early breast cancer data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 12(5), pages 619-635, October.
  16. Grace Y. Yi & Wenqing He & Raymond. J. Carroll, 2022. "Feature screening with large‐scale and high‐dimensional survival data," Biometrics, The International Biometric Society, vol. 78(3), pages 894-907, September.
  17. Lian, Heng & Du, Pang & Li, YuanZhang & Liang, Hua, 2014. "Partially linear structure identification in generalized additive models with NP-dimensionality," Computational Statistics & Data Analysis, Elsevier, vol. 80(C), pages 197-208.
  18. Wei-Chung Cheng & Wun-Yi Shu & Chia-Yang Li & Min-Lung Tsai & Cheng-Wei Chang & Chaang-Ray Chen & Hung-Tsu Cheng & Tzu-Hao Wang & Ian C Hsu, 2012. "Intra- and Inter-Individual Variance of Gene Expression in Clinical Studies," PLOS ONE, Public Library of Science, vol. 7(6), pages 1-8, June.
  19. van Wieringen, Wessel N. & Kun, David & Hampel, Regina & Boulesteix, Anne-Laure, 2009. "Survival prediction using gene expression data: A review and comparison," Computational Statistics & Data Analysis, Elsevier, vol. 53(5), pages 1590-1603, March.
  20. Patrick Nathan Lawlor & Tomer Kalisky & Robert Rosner & Marsha Rich Rosner & Konrad Paul Kording, 2014. "Conceptualizing Cancer Drugs as Classifiers," PLOS ONE, Public Library of Science, vol. 9(9), pages 1-10, September.
  21. Jan, Budczies & Kosztyla, Daniel & von Törne, Christian & Stenzinger, Albrecht & Darb-Esfahani, Silvia & Dietel, Manfred & Denkert, Carsten, 2014. "cancerclass: An R Package for Development and Validation of Diagnostic Tests from High-Dimensional Molecular Data," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 59(i01).
  22. Foucher Yohann & Danger Richard, 2012. "Time Dependent ROC Curves for the Estimation of True Prognostic Capacity of Microarray Data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 11(6), pages 1-22, November.
  23. Cambrosio, Alberto & Campbell, Jonah & Keating, Peter & Bourret, Pascale, 2022. "Multi-polar scripts: Techno-regulatory environments and the rise of precision oncology diagnostic tests," Social Science & Medicine, Elsevier, vol. 304(C).
  24. Jing Zhang & Haibo Zhou & Yanyan Liu & Jianwen Cai, 2021. "Feature screening for case‐cohort studies with failure time outcome," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 48(1), pages 349-370, March.
  25. Lama, Nicola & Boracchi, Patrizia & Biganzoli, Elia, 2009. "Exploration of distributional models for a novel intensity-dependent normalization procedure in censored gene expression data," Computational Statistics & Data Analysis, Elsevier, vol. 53(5), pages 1906-1922, March.
  26. Derval, Guillaume & Schaus, Pierre, 2022. "Maximal-Sum submatrix search using a hybrid contraint programming/linear programming approach," European Journal of Operational Research, Elsevier, vol. 297(3), pages 853-865.
  27. Chen, Weijie & Yousef, Waleed A. & Gallas, Brandon D. & Hsu, Elizabeth R. & Lababidi, Samir & Tang, Rong & Pennello, Gene A. & Symmans, W. Fraser & Pusztai, Lajos, 2012. "Uncertainty estimation with a finite dataset in the assessment of classification models," Computational Statistics & Data Analysis, Elsevier, vol. 56(5), pages 1016-1027.
  28. Zhaoliang Wang & Liugen Xue & Gaorong Li & Fei Lu, 2019. "Spline estimator for ultra-high dimensional partially linear varying coefficient models," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 71(3), pages 657-677, June.
  29. Ma, Shuangge & Dai, Ying & Huang, Jian & Xie, Yang, 2012. "Identification of breast cancer prognosis markers via integrative analysis," Computational Statistics & Data Analysis, Elsevier, vol. 56(9), pages 2718-2728.
  30. Dettling, Marcel & Bühlmann, Peter, 2004. "Finding predictive gene groups from microarray data," Journal of Multivariate Analysis, Elsevier, vol. 90(1), pages 106-131, July.
  31. Christof Winter & Glen Kristiansen & Stephan Kersting & Janine Roy & Daniela Aust & Thomas Knösel & Petra Rümmele & Beatrix Jahnke & Vera Hentrich & Felix Rückert & Marco Niedergethmann & Wilko Weiche, 2012. "Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes," PLOS Computational Biology, Public Library of Science, vol. 8(5), pages 1-16, May.
  32. Jun Yao & Qi Zhao & Ying Yuan & Li Zhang & Xiaoming Liu & W K Alfred Yung & John N Weinstein, 2012. "Identification of Common Prognostic Gene Expression Signatures with Biological Meanings from Microarray Gene Expression Datasets," PLOS ONE, Public Library of Science, vol. 7(9), pages 1-11, September.
  33. Momin M. Malik, 2020. "A Hierarchy of Limitations in Machine Learning," Papers 2002.05193, arXiv.org, revised Feb 2020.
  34. Zhiguang Huo & Ying Ding & Silvia Liu & Steffi Oesterreich & George Tseng, 2016. "Meta-Analytic Framework for Sparse K -Means to Identify Disease Subtypes in Multiple Transcriptomic Studies," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(513), pages 27-42, March.
  35. Gaynor, Sheila & Bair, Eric, 2017. "Identification of relevant subtypes via preweighted sparse clustering," Computational Statistics & Data Analysis, Elsevier, vol. 116(C), pages 139-154.
  36. Khan Md Hasinur Rahaman & Bhadra Anamika & Howlader Tamanna, 2019. "Stability selection for lasso, ridge and elastic net implemented with AFT models," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 18(5), pages 1-14, October.
  37. Zhang, Shucong & Zhou, Yong, 2018. "Variable screening for ultrahigh dimensional heterogeneous data via conditional quantile correlations," Journal of Multivariate Analysis, Elsevier, vol. 165(C), pages 1-13.
  38. Rabea Aschenbruck & Gero Szepannek & Adalbert F. X. Wilhelm, 2023. "Imputation Strategies for Clustering Mixed-Type Data with Missing Values," Journal of Classification, Springer;The Classification Society, vol. 40(1), pages 2-24, April.
  39. Meysam Bastani & Larissa Vos & Nasimeh Asgarian & Jean Deschenes & Kathryn Graham & John Mackey & Russell Greiner, 2013. "A Machine Learned Classifier That Uses Gene Expression Data to Accurately Predict Estrogen Receptor Status," PLOS ONE, Public Library of Science, vol. 8(12), pages 1-9, December.
  40. Lu, Shuiyun & Chen, Xiaolin & Xu, Sheng & Liu, Chunling, 2020. "Joint model-free feature screening for ultra-high dimensional semi-competing risks data," Computational Statistics & Data Analysis, Elsevier, vol. 147(C).
  41. Zhang, Qiuyan & Wang, Chen & Zhang, Baoxue & Yang, Hu, 2024. "An RIHT statistic for testing the equality of several high-dimensional mean vectors under homoskedasticity," Computational Statistics & Data Analysis, Elsevier, vol. 190(C).
  42. Lian, I.B. & Chang, C.J. & Liang, Y.J. & Yang, M.J. & Fann, C.S.J., 2007. "Identifying differentially expressed genes in dye-swapped microarray experiments of small sample size," Computational Statistics & Data Analysis, Elsevier, vol. 51(5), pages 2602-2620, February.
  43. Antoniadis, Anestis & Fryzlewicz, Piotr & Letué, Frédérique, 2010. "The Dantzig selector in Cox's proportional hazards model," LSE Research Online Documents on Economics 30992, London School of Economics and Political Science, LSE Library.
  44. Cipolli III, William & Hanson, Timothy & McLain, Alexander C., 2016. "Bayesian nonparametric multiple testing," Computational Statistics & Data Analysis, Elsevier, vol. 101(C), pages 64-79.
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