IDEAS home Printed from https://ideas.repec.org/p/ehl/lserod/123984.html
   My bibliography  Save this paper

A note on Ising network analysis with missing data

Author

Listed:
  • Zhang, Siliang
  • Chen, Yunxiao

Abstract

The Ising model has become a popular psychometric model for analyzing item response data. The statistical inference of the Ising model is typically carried out via a pseudo-likelihood, as the standard likelihood approach suffers from a high computational cost when there are many variables (i.e., items). Unfortunately, the presence of missing values can hinder the use of pseudo-likelihood, and a listwise deletion approach for missing data treatment may introduce a substantial bias into the estimation and sometimes yield misleading interpretations. This paper proposes a conditional Bayesian framework for Ising network analysis with missing data, which integrates a pseudo-likelihood approach with iterative data imputation. An asymptotic theory is established for the method. Furthermore, a computationally efficient Pólya–Gamma data augmentation procedure is proposed to streamline the sampling of model parameters. The method’s performance is shown through simulations and a real-world application to data on major depressive and generalized anxiety disorders from the National Epidemiological Survey on Alcohol and Related Conditions (NESARC).

Suggested Citation

  • Zhang, Siliang & Chen, Yunxiao, 2024. "A note on Ising network analysis with missing data," LSE Research Online Documents on Economics 123984, London School of Economics and Political Science, LSE Library.
  • Handle: RePEc:ehl:lserod:123984
    as

    Download full text from publisher

    File URL: http://eprints.lse.ac.uk/123984/
    File Function: Open access version.
    Download Restriction: no
    ---><---

    References listed on IDEAS

    as
    1. Edward Ip, 2002. "Locally dependent latent trait model and the dutch identity revisited," Psychometrika, Springer;The Psychometric Society, vol. 67(3), pages 367-386, September.
    2. Sacha Epskamp, 2020. "Psychometric network models from time-series and panel data," Psychometrika, Springer;The Psychometric Society, vol. 85(1), pages 206-231, March.
    3. Maarten Marsman & Mijke Rhemtulla, 2022. "Guest Editors’ Introduction to The Special Issue “Network Psychometrics in Action”: Methodological Innovations Inspired by Empirical Problems," Psychometrika, Springer;The Psychometric Society, vol. 87(1), pages 1-11, March.
    4. Yunxiao Chen & Xiaoou Li & Jingchen Liu & Zhiliang Ying, 2018. "Robust Measurement via A Fused Latent and Graphical Item Response Theory Model," Psychometrika, Springer;The Psychometric Society, vol. 83(3), pages 538-562, September.
    5. Jingchen Liu & Andrew Gelman & Jennifer Hill & Yu-Sung Su & Jonathan Kropko, 2014. "On the stationary distribution of iterative imputations," Biometrika, Biometrika Trust, vol. 101(1), pages 155-173.
    6. Carolyn Anderson & Hsiu-Ting Yu, 2007. "Log-Multiplicative Association Models as Item Response Models," Psychometrika, Springer;The Psychometric Society, vol. 72(1), pages 5-23, March.
    7. M. Marsman & K. Huth & L. J. Waldorp & I. Ntzoufras, 2022. "Objective Bayesian Edge Screening and Structure Selection for Ising Networks," Psychometrika, Springer;The Psychometric Society, vol. 87(1), pages 47-82, March.
    8. Paul Holland, 1990. "The Dutch Identity: A new tool for the study of item response models," Psychometrika, Springer;The Psychometric Society, vol. 55(1), pages 5-18, March.
    9. Nicholas G. Polson & James G. Scott & Jesse Windle, 2013. "Bayesian Inference for Logistic Models Using Pólya--Gamma Latent Variables," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 108(504), pages 1339-1349, December.
    10. Clara Simon de Blas & Daniel Gomez Gonzalez & Regino Criado Herrero, 2021. "Network analysis: An indispensable tool for curricula design. A real case-study of the degree on mathematics at the URJC in Spain," PLOS ONE, Public Library of Science, vol. 16(3), pages 1-21, March.
    11. Ming Yuan & Yi Lin, 2007. "Model selection and estimation in the Gaussian graphical model," Biometrika, Biometrika Trust, vol. 94(1), pages 19-35.
    12. Krista J. Gile & Mark S. Handcock, 2017. "Analysis of networks with missing data with application to the National Longitudinal Study of Adolescent Health," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 66(3), pages 501-519, April.
    13. Denny Borsboom, 2022. "Possible Futures for Network Psychometrics," Psychometrika, Springer;The Psychometric Society, vol. 87(1), pages 253-265, March.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. M. Marsman & H. Sigurdardóttir & M. Bolsinova & G. Maris, 2019. "Characterizing the Manifest Probability Distributions of Three Latent Trait Models for Accuracy and Response Time," Psychometrika, Springer;The Psychometric Society, vol. 84(3), pages 870-891, September.
    2. Yunxiao Chen & Xiaoou Li & Jingchen Liu & Zhiliang Ying, 2018. "Robust Measurement via A Fused Latent and Graphical Item Response Theory Model," Psychometrika, Springer;The Psychometric Society, vol. 83(3), pages 538-562, September.
    3. Chen, Yunxiao & Li, Xiaoou & Liu, Jingchen & Ying, Zhiliang, 2018. "Robust measurement via a fused latent and graphical item response theory model," LSE Research Online Documents on Economics 103181, London School of Economics and Political Science, LSE Library.
    4. Alexander Robitzsch, 2021. "A Comprehensive Simulation Study of Estimation Methods for the Rasch Model," Stats, MDPI, vol. 4(4), pages 1-23, October.
    5. repec:jss:jstsof:20:i06 is not listed on IDEAS
    6. Carolyn Anderson, 2013. "Multidimensional Item Response Theory Models with Collateral Information as Poisson Regression Models," Journal of Classification, Springer;The Classification Society, vol. 30(2), pages 276-303, July.
    7. Svend Kreiner & Karl Christensen, 2011. "Item Screening in Graphical Loglinear Rasch Models," Psychometrika, Springer;The Psychometric Society, vol. 76(2), pages 228-256, April.
    8. Jinsong Chen, 2020. "A Partially Confirmatory Approach to the Multidimensional Item Response Theory with the Bayesian Lasso," Psychometrika, Springer;The Psychometric Society, vol. 85(3), pages 738-774, September.
    9. Buddhavarapu, Prasad & Bansal, Prateek & Prozzi, Jorge A., 2021. "A new spatial count data model with time-varying parameters," Transportation Research Part B: Methodological, Elsevier, vol. 150(C), pages 566-586.
    10. Niko Hauzenberger & Florian Huber, 2020. "Model instability in predictive exchange rate regressions," Journal of Forecasting, John Wiley & Sons, Ltd., vol. 39(2), pages 168-186, March.
    11. Avagyan, Vahe & Nogales, Francisco J., 2015. "D-trace Precision Matrix Estimation Using Adaptive Lasso Penalties," DES - Working Papers. Statistics and Econometrics. WS 21775, Universidad Carlos III de Madrid. Departamento de Estadística.
    12. Nana Kim & Daniel M. Bolt & James Wollack, 2022. "Noncompensatory MIRT For Passage-Based Tests," Psychometrika, Springer;The Psychometric Society, vol. 87(3), pages 992-1009, September.
    13. Anindya Bhadra & Arvind Rao & Veerabhadran Baladandayuthapani, 2018. "Inferring network structure in non†normal and mixed discrete†continuous genomic data," Biometrics, The International Biometric Society, vol. 74(1), pages 185-195, March.
    14. Byrd, Michael & Nghiem, Linh H. & McGee, Monnie, 2021. "Bayesian regularization of Gaussian graphical models with measurement error," Computational Statistics & Data Analysis, Elsevier, vol. 156(C).
    15. Haoying Wang & Guohui Wu, 2022. "Modeling discrete choices with large fine-scale spatial data: opportunities and challenges," Journal of Geographical Systems, Springer, vol. 24(3), pages 325-351, July.
    16. Jie Jian & Peijun Sang & Mu Zhu, 2024. "Two Gaussian Regularization Methods for Time-Varying Networks," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 29(4), pages 853-873, December.
    17. Duo Jiang & Thomas Sharpton & Yuan Jiang, 2021. "Microbial Interaction Network Estimation via Bias-Corrected Graphical Lasso," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 13(2), pages 329-350, July.
    18. Lam, Clifford, 2008. "Estimation of large precision matrices through block penalization," LSE Research Online Documents on Economics 31543, London School of Economics and Political Science, LSE Library.
    19. Giraud Christophe & Huet Sylvie & Verzelen Nicolas, 2012. "Graph Selection with GGMselect," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 11(3), pages 1-52, February.
    20. Seunghwan Lee & Sang Cheol Kim & Donghyeon Yu, 2023. "An efficient GPU-parallel coordinate descent algorithm for sparse precision matrix estimation via scaled lasso," Computational Statistics, Springer, vol. 38(1), pages 217-242, March.
    21. Benjamin Poignard & Manabu Asai, 2023. "Estimation of high-dimensional vector autoregression via sparse precision matrix," The Econometrics Journal, Royal Economic Society, vol. 26(2), pages 307-326.

    More about this item

    Keywords

    Ising model; iterative imputation; full conditional specification; network psychometrics; mental health disorders; major depressive disorder; generalized anxiety disorder;
    All these keywords.

    JEL classification:

    • C1 - Mathematical and Quantitative Methods - - Econometric and Statistical Methods and Methodology: General

    NEP fields

    This paper has been announced in the following NEP Reports:

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:ehl:lserod:123984. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: LSERO Manager (email available below). General contact details of provider: https://edirc.repec.org/data/lsepsuk.html .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.