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Model Uncertainty and Model Averaging in the Estimation of Infectious Doses for Microbial Pathogens

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  • Hojin Moon
  • Steven B. Kim
  • James J. Chen
  • Nysia I. George
  • Ralph L. Kodell

Abstract

Food‐borne infection is caused by intake of foods or beverages contaminated with microbial pathogens. Dose‐response modeling is used to estimate exposure levels of pathogens associated with specific risks of infection or illness. When a single dose‐response model is used and confidence limits on infectious doses are calculated, only data uncertainty is captured. We propose a method to estimate the lower confidence limit on an infectious dose by including model uncertainty and separating it from data uncertainty. The infectious dose is estimated by a weighted average of effective dose estimates from a set of dose‐response models via a Kullback information criterion. The confidence interval for the infectious dose is constructed by the delta method, where data uncertainty is addressed by a bootstrap method. To evaluate the actual coverage probabilities of the lower confidence limit, a Monte Carlo simulation study is conducted under sublinear, linear, and superlinear dose‐response shapes that can be commonly found in real data sets. Our model‐averaging method achieves coverage close to nominal in almost all cases, thus providing a useful and efficient tool for accurate calculation of lower confidence limits on infectious doses.

Suggested Citation

  • Hojin Moon & Steven B. Kim & James J. Chen & Nysia I. George & Ralph L. Kodell, 2013. "Model Uncertainty and Model Averaging in the Estimation of Infectious Doses for Microbial Pathogens," Risk Analysis, John Wiley & Sons, vol. 33(2), pages 220-231, February.
    • Handle: RePEc:wly:riskan:v:33:y:2013:i:2:p:220-231
    DOI: 10.1111/j.1539-6924.2012.01853.x
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    References listed on IDEAS

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    1. A. John Bailer & Robert B. Noble & Matthew W. Wheeler, 2005. "Model Uncertainty and Risk Estimation for Experimental Studies of Quantal Responses," Risk Analysis, John Wiley & Sons, vol. 25(2), pages 291-299, April.
    2. Harry M. Marks & Margaret E. Coleman & C.‐T. Jordan Lin & Tanya Roberts, 1998. "Topics in Microbial Risk Assessment: Dynamic Flow Tree Process," Risk Analysis, John Wiley & Sons, vol. 18(3), pages 309-328, June.
    3. Cavanaugh, Joseph E., 1999. "A large-sample model selection criterion based on Kullback's symmetric divergence," Statistics & Probability Letters, Elsevier, vol. 42(4), pages 333-343, May.
    4. Christel Faes & Marc Aerts & Helena Geys & Geert Molenberghs, 2007. "Model Averaging Using Fractional Polynomials to Estimate a Safe Level of Exposure," Risk Analysis, John Wiley & Sons, vol. 27(1), pages 111-123, February.
    5. Harriet Namata & Marc Aerts & Christel Faes & Peter Teunis, 2008. "Model Averaging in Microbial Risk Assessment Using Fractional Polynomials," Risk Analysis, John Wiley & Sons, vol. 28(4), pages 891-905, August.
    6. Hojin Moon & Hyun‐Joo Kim & James J. Chen & Ralph L. Kodell, 2005. "Model Averaging Using the Kullback Information Criterion in Estimating Effective Doses for Microbial Infection and Illness," Risk Analysis, John Wiley & Sons, vol. 25(5), pages 1147-1159, October.
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    Cited by:

    1. Walter W. Piegorsch & Hui Xiong & Rabi N. Bhattacharya & Lizhen Lin, 2014. "Benchmark Dose Analysis via Nonparametric Regression Modeling," Risk Analysis, John Wiley & Sons, vol. 34(1), pages 135-151, January.
    2. Steven B. Kim & Ralph L. Kodell & Hojin Moon, 2014. "A Diversity Index for Model Space Selection in the Estimation of Benchmark and Infectious Doses via Model Averaging," Risk Analysis, John Wiley & Sons, vol. 34(3), pages 453-464, March.
    3. Signe M. Jensen & Felix M. Kluxen & Christian Ritz, 2019. "A Review of Recent Advances in Benchmark Dose Methodology," Risk Analysis, John Wiley & Sons, vol. 39(10), pages 2295-2315, October.
    4. Signe M. Jensen & Christian Ritz, 2015. "Simultaneous Inference for Model Averaging of Derived Parameters," Risk Analysis, John Wiley & Sons, vol. 35(1), pages 68-76, January.

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