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Distance-based classifier by data transformation for high-dimension, strongly spiked eigenvalue models

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  • Makoto Aoshima

    (University of Tsukuba)

  • Kazuyoshi Yata

    (University of Tsukuba)

Abstract

We consider classifiers for high-dimensional data under the strongly spiked eigenvalue (SSE) model. We first show that high-dimensional data often have the SSE model. We consider a distance-based classifier using eigenstructures for the SSE model. We apply the noise-reduction methodology to estimation of the eigenvalues and eigenvectors in the SSE model. We create a new distance-based classifier by transforming data from the SSE model to the non-SSE model. We give simulation studies and discuss the performance of the new classifier. Finally, we demonstrate the new classifier by using microarray data sets.

Suggested Citation

  • Makoto Aoshima & Kazuyoshi Yata, 2019. "Distance-based classifier by data transformation for high-dimension, strongly spiked eigenvalue models," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 71(3), pages 473-503, June.
  • Handle: RePEc:spr:aistmt:v:71:y:2019:i:3:d:10.1007_s10463-018-0655-z
    DOI: 10.1007/s10463-018-0655-z
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    References listed on IDEAS

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    1. Peter Hall & J. S. Marron & Amnon Neeman, 2005. "Geometric representation of high dimension, low sample size data," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(3), pages 427-444, June.
    2. Marron, J.S. & Todd, Michael J. & Ahn, Jeongyoun, 2007. "Distance-Weighted Discrimination," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 1267-1271, December.
    3. Yata, Kazuyoshi & Aoshima, Makoto, 2013. "PCA consistency for the power spiked model in high-dimensional settings," Journal of Multivariate Analysis, Elsevier, vol. 122(C), pages 334-354.
    4. Jeongyoun Ahn & J. S. Marron, 2010. "The maximal data piling direction for discrimination," Biometrika, Biometrika Trust, vol. 97(1), pages 254-259.
    5. Yata, Kazuyoshi & Aoshima, Makoto, 2012. "Effective PCA for high-dimension, low-sample-size data with noise reduction via geometric representations," Journal of Multivariate Analysis, Elsevier, vol. 105(1), pages 193-215.
    6. Chen, Song Xi & Qin, Yingli, 2010. "A Two Sample Test for High Dimensional Data with Applications to Gene-set Testing," MPRA Paper 59642, University Library of Munich, Germany.
    7. Makoto Aoshima & Kazuyoshi Yata, 2014. "A distance-based, misclassification rate adjusted classifier for multiclass, high-dimensional data," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 66(5), pages 983-1010, October.
    8. Dudoit S. & Fridlyand J. & Speed T. P, 2002. "Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data," Journal of the American Statistical Association, American Statistical Association, vol. 97, pages 77-87, March.
    9. Watanabe, Hiroki & Hyodo, Masashi & Seo, Takashi & Pavlenko, Tatjana, 2015. "Asymptotic properties of the misclassification rates for Euclidean Distance Discriminant rule in high-dimensional data," Journal of Multivariate Analysis, Elsevier, vol. 140(C), pages 234-244.
    10. Peter Hall & Yvonne Pittelkow & Malay Ghosh, 2008. "Theoretical measures of relative performance of classifiers for high dimensional data with small sample sizes," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(1), pages 159-173, February.
    11. Yata, Kazuyoshi & Aoshima, Makoto, 2010. "Effective PCA for high-dimension, low-sample-size data with singular value decomposition of cross data matrix," Journal of Multivariate Analysis, Elsevier, vol. 101(9), pages 2060-2077, October.
    12. Enrico Glaab & Jaume Bacardit & Jonathan M Garibaldi & Natalio Krasnogor, 2012. "Using Rule-Based Machine Learning for Candidate Disease Gene Prioritization and Sample Classification of Cancer Gene Expression Data," PLOS ONE, Public Library of Science, vol. 7(7), pages 1-18, July.
    13. Yao-Ban Chan & Peter Hall, 2009. "Scale adjustments for classifiers in high-dimensional, low sample size settings," Biometrika, Biometrika Trust, vol. 96(2), pages 469-478.
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    Cited by:

    1. Yugo Nakayama & Kazuyoshi Yata & Makoto Aoshima, 2020. "Bias-corrected support vector machine with Gaussian kernel in high-dimension, low-sample-size settings," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 72(5), pages 1257-1286, October.
    2. Liebscher, Eckhard & Okhrin, Ostap, 2023. "Semiparametric estimation of the high-dimensional elliptical distribution," Journal of Multivariate Analysis, Elsevier, vol. 195(C).
    3. Ishii, Aki & Yata, Kazuyoshi & Aoshima, Makoto, 2022. "Geometric classifiers for high-dimensional noisy data," Journal of Multivariate Analysis, Elsevier, vol. 188(C).
    4. Aki Ishii & Kazuyoshi Yata & Makoto Aoshima, 2021. "Hypothesis tests for high-dimensional covariance structures," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 73(3), pages 599-622, June.
    5. Nakagawa, Tomoyuki & Watanabe, Hiroki & Hyodo, Masashi, 2021. "Kick-one-out-based variable selection method for Euclidean distance-based classifier in high-dimensional settings," Journal of Multivariate Analysis, Elsevier, vol. 184(C).
    6. Nakayama, Yugo & Yata, Kazuyoshi & Aoshima, Makoto, 2021. "Clustering by principal component analysis with Gaussian kernel in high-dimension, low-sample-size settings," Journal of Multivariate Analysis, Elsevier, vol. 185(C).

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