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Effective PCA for high-dimension, low-sample-size data with noise reduction via geometric representations

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  • Yata, Kazuyoshi
  • Aoshima, Makoto

Abstract

In this article, we propose a new estimation methodology to deal with PCA for high-dimension, low-sample-size (HDLSS) data. We first show that HDLSS datasets have different geometric representations depending on whether a ρ-mixing-type dependency appears in variables or not. When the ρ-mixing-type dependency appears in variables, the HDLSS data converge to an n-dimensional surface of unit sphere with increasing dimension. We pay special attention to this phenomenon. We propose a method called the noise-reduction methodology to estimate eigenvalues of a HDLSS dataset. We show that the eigenvalue estimator holds consistency properties along with its limiting distribution in HDLSS context. We consider consistency properties of PC directions. We apply the noise-reduction methodology to estimating PC scores. We also give an application in the discriminant analysis for HDLSS datasets by using the inverse covariance matrix estimator induced by the noise-reduction methodology.

Suggested Citation

  • Yata, Kazuyoshi & Aoshima, Makoto, 2012. "Effective PCA for high-dimension, low-sample-size data with noise reduction via geometric representations," Journal of Multivariate Analysis, Elsevier, vol. 105(1), pages 193-215.
    • Handle: RePEc:eee:jmvana:v:105:y:2012:i:1:p:193-215
    DOI: 10.1016/j.jmva.2011.09.002
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    References listed on IDEAS

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    1. Peter Hall & J. S. Marron & Amnon Neeman, 2005. "Geometric representation of high dimension, low sample size data," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(3), pages 427-444, June.
    2. Baik, Jinho & Silverstein, Jack W., 2006. "Eigenvalues of large sample covariance matrices of spiked population models," Journal of Multivariate Analysis, Elsevier, vol. 97(6), pages 1382-1408, July.
    3. Srivastava, Muni S., 2006. "Minimum distance classification rules for high dimensional data," Journal of Multivariate Analysis, Elsevier, vol. 97(9), pages 2057-2070, October.
    4. Yata, Kazuyoshi & Aoshima, Makoto, 2010. "Effective PCA for high-dimension, low-sample-size data with singular value decomposition of cross data matrix," Journal of Multivariate Analysis, Elsevier, vol. 101(9), pages 2060-2077, October.
    5. Jeongyoun Ahn & J. S. Marron & Keith M. Muller & Yueh-Yun Chi, 2007. "The high-dimension, low-sample-size geometric representation holds under mild conditions," Biometrika, Biometrika Trust, vol. 94(3), pages 760-766.
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    Citations

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    Cited by:

    1. Makoto Aoshima & Kazuyoshi Yata, 2019. "Distance-based classifier by data transformation for high-dimension, strongly spiked eigenvalue models," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 71(3), pages 473-503, June.
    2. Ishii, Aki & Yata, Kazuyoshi & Aoshima, Makoto, 2022. "Geometric classifiers for high-dimensional noisy data," Journal of Multivariate Analysis, Elsevier, vol. 188(C).
    3. Kristoffer H. Hellton & Magne Thoresen, 2017. "When and Why are Principal Component Scores a Good Tool for Visualizing High-dimensional Data?," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 44(3), pages 581-597, September.
    4. Wang, Shao-Hsuan & Huang, Su-Yun & Chen, Ting-Li, 2020. "On asymptotic normality of cross data matrix-based PCA in high dimension low sample size," Journal of Multivariate Analysis, Elsevier, vol. 175(C).
    5. Makoto Aoshima & Kazuyoshi Yata, 2014. "A distance-based, misclassification rate adjusted classifier for multiclass, high-dimensional data," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 66(5), pages 983-1010, October.
    6. Yata, Kazuyoshi & Aoshima, Makoto, 2013. "PCA consistency for the power spiked model in high-dimensional settings," Journal of Multivariate Analysis, Elsevier, vol. 122(C), pages 334-354.
    7. Yata, Kazuyoshi & Aoshima, Makoto, 2013. "Correlation tests for high-dimensional data using extended cross-data-matrix methodology," Journal of Multivariate Analysis, Elsevier, vol. 117(C), pages 313-331.
    8. Nakayama, Yugo & Yata, Kazuyoshi & Aoshima, Makoto, 2021. "Clustering by principal component analysis with Gaussian kernel in high-dimension, low-sample-size settings," Journal of Multivariate Analysis, Elsevier, vol. 185(C).
    9. Jonathan Gillard & Emily O’Riordan & Anatoly Zhigljavsky, 2023. "Polynomial whitening for high-dimensional data," Computational Statistics, Springer, vol. 38(3), pages 1427-1461, September.
    10. Bando, Takuma & Sei, Tomonari & Yata, Kazuyoshi, 2022. "Consistency of the objective general index in high-dimensional settings," Journal of Multivariate Analysis, Elsevier, vol. 189(C).
    11. Kazuyoshi Yata & Makoto Aoshima, 2020. "Geometric consistency of principal component scores for high‐dimensional mixture models and its application," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 47(3), pages 899-921, September.
    12. Liebscher, Eckhard & Okhrin, Ostap, 2023. "Semiparametric estimation of the high-dimensional elliptical distribution," Journal of Multivariate Analysis, Elsevier, vol. 195(C).
    13. Wang, Shao-Hsuan & Huang, Su-Yun, 2022. "Perturbation theory for cross data matrix-based PCA," Journal of Multivariate Analysis, Elsevier, vol. 190(C).
    14. Shen, Dan & Shen, Haipeng & Marron, J.S., 2013. "Consistency of sparse PCA in High Dimension, Low Sample Size contexts," Journal of Multivariate Analysis, Elsevier, vol. 115(C), pages 317-333.
    15. Aki Ishii & Kazuyoshi Yata & Makoto Aoshima, 2021. "Hypothesis tests for high-dimensional covariance structures," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 73(3), pages 599-622, June.
    16. Shabalin, Andrey A. & Nobel, Andrew B., 2013. "Reconstruction of a low-rank matrix in the presence of Gaussian noise," Journal of Multivariate Analysis, Elsevier, vol. 118(C), pages 67-76.
    17. Borysov, Petro & Hannig, Jan & Marron, J.S., 2014. "Asymptotics of hierarchical clustering for growing dimension," Journal of Multivariate Analysis, Elsevier, vol. 124(C), pages 465-479.

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