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Functional principal component analysis for identifying multivariate patterns and archetypes of growth, and their association with long-term cognitive development

Author

Listed:
  • Kyunghee Han
  • Pantelis Z Hadjipantelis
  • Jane-Ling Wang
  • Michael S Kramer
  • Seungmi Yang
  • Richard M Martin
  • Hans-Georg Müller

Abstract

For longitudinal studies with multivariate observations, we propose statistical methods to identify clusters of archetypal subjects by using techniques from functional data analysis and to relate longitudinal patterns to outcomes. We demonstrate how this approach can be applied to examine associations between multiple time-varying exposures and subsequent health outcomes, where the former are recorded sparsely and irregularly in time, with emphasis on the utility of multiple longitudinal observations in the framework of dimension reduction techniques. In applications to children’s growth data, we investigate archetypes of infant growth patterns and identify subgroups that are related to cognitive development in childhood. Specifically, “Stunting” and “Faltering” time-dynamic patterns of head circumference, body length and weight in the first 12 months are associated with lower levels of long-term cognitive development in comparison to “Generally Large” and “Catch-up” growth. Our findings provide evidence for the statistical association between multivariate growth patterns in infancy and long-term cognitive development.

Suggested Citation

  • Kyunghee Han & Pantelis Z Hadjipantelis & Jane-Ling Wang & Michael S Kramer & Seungmi Yang & Richard M Martin & Hans-Georg Müller, 2018. "Functional principal component analysis for identifying multivariate patterns and archetypes of growth, and their association with long-term cognitive development," PLOS ONE, Public Library of Science, vol. 13(11), pages 1-18, November.
    • Handle: RePEc:plo:pone00:0207073
    DOI: 10.1371/journal.pone.0207073
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    References listed on IDEAS

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    1. Vinué, Guillermo & Epifanio, Irene & Alemany, Sandra, 2015. "Archetypoids: A new approach to define representative archetypal data," Computational Statistics & Data Analysis, Elsevier, vol. 87(C), pages 102-115.
    2. Mia Hubert & Peter Rousseeuw & Pieter Segaert, 2015. "Multivariate functional outlier detection," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 24(2), pages 177-202, July.
    3. Tomasz Górecki & Mirosław Krzyśko & Łukasz Waszak & Waldemar Wołyński, 2018. "Selected statistical methods of data analysis for multivariate functional data," Statistical Papers, Springer, vol. 59(1), pages 153-182, March.
    4. Yao, Fang & Muller, Hans-Georg & Wang, Jane-Ling, 2005. "Functional Data Analysis for Sparse Longitudinal Data," Journal of the American Statistical Association, American Statistical Association, vol. 100, pages 577-590, June.
    5. Juhyun Park & Jeongyoun Ahn, 2017. "Clustering multivariate functional data with phase variation," Biometrics, The International Biometric Society, vol. 73(1), pages 324-333, March.
    6. Fang Yao & Thomas C. M. Lee, 2006. "Penalized spline models for functional principal component analysis," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(1), pages 3-25, February.
    7. Berrendero, J.R. & Justel, A. & Svarc, M., 2011. "Principal components for multivariate functional data," Computational Statistics & Data Analysis, Elsevier, vol. 55(9), pages 2619-2634, September.
    8. Yehua Li & Naisyin Wang & Raymond J. Carroll, 2013. "Selecting the Number of Principal Components in Functional Data," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 108(504), pages 1284-1294, December.
    9. Dauxois, J. & Pousse, A. & Romain, Y., 1982. "Asymptotic theory for the principal component analysis of a vector random function: Some applications to statistical inference," Journal of Multivariate Analysis, Elsevier, vol. 12(1), pages 136-154, March.
    10. Pallavi Sawant & Nedret Billor & Hyejin Shin, 2012. "Functional outlier detection with robust functional principal component analysis," Computational Statistics, Springer, vol. 27(1), pages 83-102, March.
    11. Wei, Ying, 2008. "An Approach to Multivariate Covariate-Dependent Quantile Contours With Application to Bivariate Conditional Growth Charts," Journal of the American Statistical Association, American Statistical Association, vol. 103, pages 397-409, March.
    12. John A. Rice & Colin O. Wu, 2001. "Nonparametric Mixed Effects Models for Unequally Sampled Noisy Curves," Biometrics, The International Biometric Society, vol. 57(1), pages 253-259, March.
    13. T. Górecki & Ł. Smaga, 2017. "Multivariate analysis of variance for functional data," Journal of Applied Statistics, Taylor & Francis Journals, vol. 44(12), pages 2172-2189, September.
    14. Philippe Besse & J. Ramsay, 1986. "Principal components analysis of sampled functions," Psychometrika, Springer;The Psychometric Society, vol. 51(2), pages 285-311, June.
    15. Cuevas, Antonio & Febrero, Manuel & Fraiman, Ricardo, 2004. "An anova test for functional data," Computational Statistics & Data Analysis, Elsevier, vol. 47(1), pages 111-122, August.
    16. Lan Zhou & Jianhua Z. Huang & Raymond J. Carroll, 2008. "Joint modelling of paired sparse functional data using principal components," Biometrika, Biometrika Trust, vol. 95(3), pages 601-619.
    17. Boente, Graciela & Fraiman, Ricardo, 2000. "Kernel-based functional principal components," Statistics & Probability Letters, Elsevier, vol. 48(4), pages 335-345, July.
    18. Naveen N. Narisetty & Vijayan N. Nair, 2016. "Extremal Depth for Functional Data and Applications," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(516), pages 1705-1714, October.
    19. Epifanio, Irene, 2016. "Functional archetype and archetypoid analysis," Computational Statistics & Data Analysis, Elsevier, vol. 104(C), pages 24-34.
    20. Peter Hall & Mohammad Hosseini‐Nasab, 2006. "On properties of functional principal components analysis," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(1), pages 109-126, February.
    21. Clara Happ & Sonja Greven, 2018. "Multivariate Functional Principal Component Analysis for Data Observed on Different (Dimensional) Domains," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 113(522), pages 649-659, April.
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    Cited by:

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    2. Cody Carroll & Hans‐Georg Müller & Alois Kneip, 2021. "Cross‐component registration for multivariate functional data, with application to growth curves," Biometrics, The International Biometric Society, vol. 77(3), pages 839-851, September.
    3. Shuxi Zeng & Elizabeth C. Lange & Elizabeth A. Archie & Fernando A. Campos & Susan C. Alberts & Fan Li, 2023. "A Causal Mediation Model for Longitudinal Mediators and Survival Outcomes with an Application to Animal Behavior," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 28(2), pages 197-218, June.

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