IDEAS home Printed from https://ideas.repec.org/a/plo/pone00/0199292.html
   My bibliography  Save this article

Assessing the multi-scale predictive ability of ecosystem functional attributes for species distribution modelling

Author

Listed:
  • Salvador Arenas-Castro
  • João Gonçalves
  • Paulo Alves
  • Domingo Alcaraz-Segura
  • João P Honrado

Abstract

Global environmental changes are rapidly affecting species’ distributions and habitat suitability worldwide, requiring a continuous update of biodiversity status to support effective decisions on conservation policy and management. In this regard, satellite-derived Ecosystem Functional Attributes (EFAs) offer a more integrative and quicker evaluation of ecosystem responses to environmental drivers and changes than climate and structural or compositional landscape attributes. Thus, EFAs may hold advantages as predictors in Species Distribution Models (SDMs) and for implementing multi-scale species monitoring programs. Here we describe a modelling framework to assess the predictive ability of EFAs as Essential Biodiversity Variables (EBVs) against traditional datasets (climate, land-cover) at several scales. We test the framework with a multi-scale assessment of habitat suitability for two plant species of conservation concern, both protected under the EU Habitats Directive, differing in terms of life history, range and distribution pattern (Iris boissieri and Taxus baccata). We fitted four sets of SDMs for the two test species, calibrated with: interpolated climate variables; landscape variables; EFAs; and a combination of climate and landscape variables. EFA-based models performed very well at the several scales (AUCmedian from 0.881±0.072 to 0.983±0.125), and similarly to traditional climate-based models, individually or in combination with land-cover predictors (AUCmedian from 0.882±0.059 to 0.995±0.083). Moreover, EFA-based models identified additional suitable areas and provided valuable information on functional features of habitat suitability for both test species (narrowly vs. widely distributed), for both coarse and fine scales. Our results suggest a relatively small scale-dependence of the predictive ability of satellite-derived EFAs, supporting their use as meaningful EBVs in SDMs from regional and broader scales to more local and finer scales. Since the evaluation of species’ conservation status and habitat quality should as far as possible be performed based on scalable indicators linking to meaningful processes, our framework may guide conservation managers in decision-making related to biodiversity monitoring and reporting schemes.

Suggested Citation

  • Salvador Arenas-Castro & João Gonçalves & Paulo Alves & Domingo Alcaraz-Segura & João P Honrado, 2018. "Assessing the multi-scale predictive ability of ecosystem functional attributes for species distribution modelling," PLOS ONE, Public Library of Science, vol. 13(6), pages 1-31, June.
  • Handle: RePEc:plo:pone00:0199292
    DOI: 10.1371/journal.pone.0199292
    as

    Download full text from publisher

    File URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0199292
    Download Restriction: no

    File URL: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0199292&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pone.0199292?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Freeman, Elizabeth A. & Moisen, Gretchen G., 2008. "A comparison of the performance of threshold criteria for binary classification in terms of predicted prevalence and kappa," Ecological Modelling, Elsevier, vol. 217(1), pages 48-58.
    2. Baasch, David M. & Tyre, Andrew J. & Millspaugh, Joshua J. & Hygnstrom, Scott E. & Vercauteren, Kurt C., 2010. "An evaluation of three statistical methods used to model resource selection," Ecological Modelling, Elsevier, vol. 221(4), pages 565-574.
    3. Cord, Anna F. & Klein, Doris & Mora, Franz & Dech, Stefan, 2014. "Comparing the suitability of classified land cover data and remote sensing variables for modeling distribution patterns of plants," Ecological Modelling, Elsevier, vol. 272(C), pages 129-140.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Sillero, Neftalí & Arenas-Castro, Salvador & Enriquez‐Urzelai, Urtzi & Vale, Cândida Gomes & Sousa-Guedes, Diana & Martínez-Freiría, Fernando & Real, Raimundo & Barbosa, A.Márcia, 2021. "Want to model a species niche? A step-by-step guideline on correlative ecological niche modelling," Ecological Modelling, Elsevier, vol. 456(C).

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Václavík, Tomáš & Meentemeyer, Ross K., 2009. "Invasive species distribution modeling (iSDM): Are absence data and dispersal constraints needed to predict actual distributions?," Ecological Modelling, Elsevier, vol. 220(23), pages 3248-3258.
    2. Avgar, Tal & Deardon, Rob & Fryxell, John M., 2013. "An empirically parameterized individual based model of animal movement, perception, and memory," Ecological Modelling, Elsevier, vol. 251(C), pages 158-172.
    3. Steven J Dempsey & Eric M Gese & Bryan M Kluever & Robert C Lonsinger & Lisette P Waits, 2015. "Evaluation of Scat Deposition Transects versus Radio Telemetry for Developing a Species Distribution Model for a Rare Desert Carnivore, the Kit Fox," PLOS ONE, Public Library of Science, vol. 10(10), pages 1-17, October.
    4. Sillero, Neftalí & Arenas-Castro, Salvador & Enriquez‐Urzelai, Urtzi & Vale, Cândida Gomes & Sousa-Guedes, Diana & Martínez-Freiría, Fernando & Real, Raimundo & Barbosa, A.Márcia, 2021. "Want to model a species niche? A step-by-step guideline on correlative ecological niche modelling," Ecological Modelling, Elsevier, vol. 456(C).
    5. Vu, Khoa & Vuong, Nguyen Dinh Tuan & Vu-Thanh, Tu-Anh & Nguyen, Anh Ngoc, 2022. "Income shock and food insecurity prediction Vietnam under the pandemic," World Development, Elsevier, vol. 153(C).
    6. David M Baasch & Patrick D Farrell & Shay Howlin & Aaron T Pearse & Jason M Farnsworth & Chadwin B Smith, 2019. "Whooping crane use of riverine stopover sites," PLOS ONE, Public Library of Science, vol. 14(1), pages 1-20, January.
    7. Wajid Rashid & Jianbin Shi & Inam ur Rahim & Muhammad Qasim & Muhammad Naveed Baloch & Eve Bohnett & Fangyuan Yang & Imran Khan & Bilal Ahmad, 2021. "Modelling Potential Distribution of Snow Leopards in Pamir, Northern Pakistan: Implications for Human–Snow Leopard Conflicts," Sustainability, MDPI, vol. 13(23), pages 1-14, November.
    8. Galbraith, Sara M. & Hall, Troy E. & Tavárez, Héctor S. & Kooistra, Chad M. & Ordoñez, Jenny C. & Bosque-Pérez, Nilsa A., 2017. "Local ecological knowledge reveals effects of policy-driven land use and cover change on beekeepers in Costa Rica," Land Use Policy, Elsevier, vol. 69(C), pages 112-122.
    9. Watling, James I. & Romañach, Stephanie S. & Bucklin, David N. & Speroterra, Carolina & Brandt, Laura A. & Pearlstine, Leonard G. & Mazzotti, Frank J., 2012. "Do bioclimate variables improve performance of climate envelope models?," Ecological Modelling, Elsevier, vol. 246(C), pages 79-85.
    10. Freeman, Elizabeth A. & Moisen, Gretchen G. & Frescino, Tracey S., 2012. "Evaluating effectiveness of down-sampling for stratified designs and unbalanced prevalence in Random Forest models of tree species distributions in Nevada," Ecological Modelling, Elsevier, vol. 233(C), pages 1-10.
    11. Schratz, Patrick & Muenchow, Jannes & Iturritxa, Eugenia & Richter, Jakob & Brenning, Alexander, 2019. "Hyperparameter tuning and performance assessment of statistical and machine-learning algorithms using spatial data," Ecological Modelling, Elsevier, vol. 406(C), pages 109-120.
    12. Dean Fantazzini & Yufeng Xiao, 2023. "Detecting Pump-and-Dumps with Crypto-Assets: Dealing with Imbalanced Datasets and Insiders’ Anticipated Purchases," Econometrics, MDPI, vol. 11(3), pages 1-73, August.
    13. Liu, Fang & McShea, William J. & Li, Diqiang, 2017. "Correlating habitat suitability with landscape connectivity: A case study of Sichuan golden monkey in China," Ecological Modelling, Elsevier, vol. 353(C), pages 37-46.
    14. Toshiya Matsuura & Ken Sugimura & Asako Miyamoto & Nobuhiko Tanaka, 2013. "Knowledge-Based Estimation of Edible Fern Harvesting Sites in Mountainous Communities of Northeastern Japan," Sustainability, MDPI, vol. 6(1), pages 1-18, December.
    15. Pecchi, Matteo & Marchi, Maurizio & Burton, Vanessa & Giannetti, Francesca & Moriondo, Marco & Bernetti, Iacopo & Bindi, Marco & Chirici, Gherardo, 2019. "Species distribution modelling to support forest management. A literature review," Ecological Modelling, Elsevier, vol. 411(C).
    16. Aziza Usmanova & Ahmed Aziz & Dilshodjon Rakhmonov & Walid Osamy, 2022. "Utilities of Artificial Intelligence in Poverty Prediction: A Review," Sustainability, MDPI, vol. 14(21), pages 1-39, October.
    17. Brice B Hanberry & Hong S He & Brian J Palik, 2012. "Pseudoabsence Generation Strategies for Species Distribution Models," PLOS ONE, Public Library of Science, vol. 7(8), pages 1-12, August.
    18. Peter M Rose & Mark J Kennard & David B Moffatt & Fran Sheldon & Gavin L Butler, 2016. "Testing Three Species Distribution Modelling Strategies to Define Fish Assemblage Reference Conditions for Stream Bioassessment and Related Applications," PLOS ONE, Public Library of Science, vol. 11(1), pages 1-23, January.
    19. Alexandra D Syphard & Avi Bar Massada & Van Butsic & Jon E Keeley, 2013. "Land Use Planning and Wildfire: Development Policies Influence Future Probability of Housing Loss," PLOS ONE, Public Library of Science, vol. 8(8), pages 1-12, August.
    20. Kazumasa Hanaoka, 2018. "New insights on relationships between street crimes and ambient population: Use of hourly population data estimated from mobile phone users’ locations," Environment and Planning B, , vol. 45(2), pages 295-311, March.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0199292. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.