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Pseudoabsence Generation Strategies for Species Distribution Models

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  • Brice B Hanberry
  • Hong S He
  • Brian J Palik

Abstract

Background: Species distribution models require selection of species, study extent and spatial unit, statistical methods, variables, and assessment metrics. If absence data are not available, another important consideration is pseudoabsence generation. Different strategies for pseudoabsence generation can produce varying spatial representation of species. Methodology: We considered model outcomes from four different strategies for generating pseudoabsences. We generating pseudoabsences randomly by 1) selection from the entire study extent, 2) a two-step process of selection first from the entire study extent, followed by selection for pseudoabsences from areas with predicted probability

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  • Brice B Hanberry & Hong S He & Brian J Palik, 2012. "Pseudoabsence Generation Strategies for Species Distribution Models," PLOS ONE, Public Library of Science, vol. 7(8), pages 1-12, August.
    • Handle: RePEc:plo:pone00:0044486
    DOI: 10.1371/journal.pone.0044486
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    References listed on IDEAS

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    1. Freeman, Elizabeth A. & Moisen, Gretchen G., 2008. "A comparison of the performance of threshold criteria for binary classification in terms of predicted prevalence and kappa," Ecological Modelling, Elsevier, vol. 217(1), pages 48-58.
    2. Gill Ward & Trevor Hastie & Simon Barry & Jane Elith & John R. Leathwick, 2009. "Presence-Only Data and the EM Algorithm," Biometrics, The International Biometric Society, vol. 65(2), pages 554-563, June.
    3. Chefaoui, Rosa M. & Lobo, Jorge M., 2008. "Assessing the effects of pseudo-absences on predictive distribution model performance," Ecological Modelling, Elsevier, vol. 210(4), pages 478-486.
    4. VanDerWal, Jeremy & Shoo, Luke P. & Graham, Catherine & Williams, Stephen E., 2009. "Selecting pseudo-absence data for presence-only distribution modeling: How far should you stray from what you know?," Ecological Modelling, Elsevier, vol. 220(4), pages 589-594.
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    3. Santiago José Elías Velazco & Franklin Galvão & Fabricio Villalobos & Paulo De Marco Júnior, 2017. "Using worldwide edaphic data to model plant species niches: An assessment at a continental extent," PLOS ONE, Public Library of Science, vol. 12(10), pages 1-24, October.

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