Predicting Metabolic Pathways of Small Molecules and Enzymes Based on Interaction Information of Chemicals and Proteins
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pone.0045944
Download full text from publisher
References listed on IDEAS
- Lei Chen & Wei-Ming Zeng & Yu-Dong Cai & Kai-Yan Feng & Kuo-Chen Chou, 2012. "Predicting Anatomical Therapeutic Chemical (ATC) Classification of Drugs by Integrating Chemical-Chemical Interactions and Similarities," PLOS ONE, Public Library of Science, vol. 7(4), pages 1-7, April.
- Yiannis A I Kourmpetis & Aalt D J van Dijk & Marco C A M Bink & Roeland C H J van Ham & Cajo J F ter Braak, 2010. "Bayesian Markov Random Field Analysis for Protein Function Prediction Based on Network Data," PLOS ONE, Public Library of Science, vol. 5(2), pages 1-10, February.
- Le-Le Hu & Tao Huang & Yu-Dong Cai & Kuo-Chen Chou, 2011. "Prediction of Body Fluids where Proteins are Secreted into Based on Protein Interaction Network," PLOS ONE, Public Library of Science, vol. 6(7), pages 1-8, July.
- Lele Hu & Tao Huang & Xiaohe Shi & Wen-Cong Lu & Yu-Dong Cai & Kuo-Chen Chou, 2011. "Predicting Functions of Proteins in Mouse Based on Weighted Protein-Protein Interaction Network and Protein Hybrid Properties," PLOS ONE, Public Library of Science, vol. 6(1), pages 1-10, January.
- Kuo-Chen Chou & Hong-Bin Shen, 2010. "A New Method for Predicting the Subcellular Localization of Eukaryotic Proteins with Both Single and Multiple Sites: Euk-mPLoc 2.0," PLOS ONE, Public Library of Science, vol. 5(4), pages 1-9, April.
- Le-Le Hu & Chen Chen & Tao Huang & Yu-Dong Cai & Kuo-Chen Chou, 2011. "Predicting Biological Functions of Compounds Based on Chemical-Chemical Interactions," PLOS ONE, Public Library of Science, vol. 6(12), pages 1-9, December.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Lei Chen & Jing Lu & Jian Zhang & Kai-Rui Feng & Ming-Yue Zheng & Yu-Dong Cai, 2013. "Predicting Chemical Toxicity Effects Based on Chemical-Chemical Interactions," PLOS ONE, Public Library of Science, vol. 8(2), pages 1-9, February.
- Guohua Huang & Yuchao Zhang & Lei Chen & Ning Zhang & Tao Huang & Yu-Dong Cai, 2014. "Prediction of Multi-Type Membrane Proteins in Human by an Integrated Approach," PLOS ONE, Public Library of Science, vol. 9(3), pages 1-11, March.
- Lei Chen & Jing Yang & Zhihao Xing & Fei Yuan & Yang Shu & YunHua Zhang & XiangYin Kong & Tao Huang & HaiPeng Li & Yu-Dong Cai, 2017. "An integrated method for the identification of novel genes related to oral cancer," PLOS ONE, Public Library of Science, vol. 12(4), pages 1-25, April.
- Kai He & Yan Wang & Xuping Xie & Dan Shao, 2022. "MultiSec: Multi-Task Deep Learning Improves Secreted Protein Discovery in Human Body Fluids," Mathematics, MDPI, vol. 10(15), pages 1-17, July.
- Lei Chen & Wei-Ming Zeng & Yu-Dong Cai & Kai-Yan Feng & Kuo-Chen Chou, 2012. "Predicting Anatomical Therapeutic Chemical (ATC) Classification of Drugs by Integrating Chemical-Chemical Interactions and Similarities," PLOS ONE, Public Library of Science, vol. 7(4), pages 1-7, April.
- Jianjun He & Hong Gu & Wenqi Liu, 2012. "Imbalanced Multi-Modal Multi-Label Learning for Subcellular Localization Prediction of Human Proteins with Both Single and Multiple Sites," PLOS ONE, Public Library of Science, vol. 7(6), pages 1-10, June.
- Dechao Tian & Kwok Pui Choi, 2013. "Sharp Bounds and Normalization of Wiener-Type Indices," PLOS ONE, Public Library of Science, vol. 8(11), pages 1-9, November.
- Le-Le Hu & Chen Chen & Tao Huang & Yu-Dong Cai & Kuo-Chen Chou, 2011. "Predicting Biological Functions of Compounds Based on Chemical-Chemical Interactions," PLOS ONE, Public Library of Science, vol. 6(12), pages 1-9, December.
- Lei Chen & Jing Lu & Tao Huang & Yu-Dong Cai, 2017. "A computational method for the identification of candidate drugs for non-small cell lung cancer," PLOS ONE, Public Library of Science, vol. 12(8), pages 1-15, August.
- Lei Chen & Chen Chu & Xiangyin Kong & Guohua Huang & Tao Huang & Yu-Dong Cai, 2015. "A Hybrid Computational Method for the Discovery of Novel Reproduction-Related Genes," PLOS ONE, Public Library of Science, vol. 10(3), pages 1-15, March.
- Chi-Hua Tung & Chi-Wei Chen & Han-Hao Sun & Yen-Wei Chu, 2017. "Predicting human protein subcellular localization by heterogeneous and comprehensive approaches," PLOS ONE, Public Library of Science, vol. 12(6), pages 1-14, June.
- Guo Sheng Han & Zu Guo Yu & Vo Anh & Anaththa P D Krishnajith & Yu-Chu Tian, 2013. "An Ensemble Method for Predicting Subnuclear Localizations from Primary Protein Structures," PLOS ONE, Public Library of Science, vol. 8(2), pages 1-14, February.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0045944. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.